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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTTTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGgtgagtaagtgacatggctttcattttcaagaccttgtcaaaaataggatatataaattgctactacacaattcttgagttctttgcttggccccatgagattttattgtcattttcactagcaagttgtgtagtctaatcattttaagttatgtaatgcag

Basic information

species Glycine max
transcript GLYMA16G23050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23050.2 (Glycine max), 5'ss of exon 4
lower sequence: AT4G35840.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTTTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGgtgagtaagtgacatggctttcattttcaagaccttgtcaaaaataggatatataaa--ttgctactacacaattcttgagttctttgcttggccccatgagattttattgtcattttcactagcaagttgtgtagtctaatcattttaagttatgtaatgcag
 || ||||| || ||||||||||| || || ||||| ||||| || || |||||||||||||||||| | || ||  |  |||| ||| || | |||||||||||    ||| ||    |||||||  ||   ||  ||     |    | |   |   ||| | | |    |||||||  ||  ||| |   |    ||                                                                
TGGAGCCATTTCGGGAGCTGTTTTCTCTATCGAAGTCTTTGAGTCATCTCTTGTTCTTTGGAAATCTAATGAGTCACGTTTTGGATGTCTCCTCTACTTGgtgagc---tgagat---cttcatttg-aactactcatctgctctgtttttttccagatttgattcgaactgattcttg--tttcttgttaatctttgtgtag-------------------------------------------------------------

upper sequence: GLYMA16G23050.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0264g00020.t01 (Vitis vinifera), 5'ss of exon 2
AGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTTTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGgtgagtaagtgacatggctttcattttcaagaccttgtcaaaaataggatatataaattgctactacacaattcttgagttctttgcttggccccatgagattttattgtcattttcactagcaagttgtgtagtctaatcattttaagttatgtaatgcag
 || || ||||||||||||||||| || ||||| || ||||||||||| |||||||| ||| ||||||| || || || ||||| ||| |  | ||| ||||||| || |    |   |  |   || |  |  |  |  ||  |  |    |||| ||| |       |||| | ||   || ||  |||    | ||      ||                                                       
TGGAGCAATATCAGGAGCTGTTTTCTCTATTGAGGTCTTTGAATCTTCTCTTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatttggcttcttgccccattgatcatatgctttaatgttagggg-ataagttggtg------aattatgga---ctctgggtgggaaaaggaagagaaatata----------------------------------------------------