1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagaaagatgtcactccttcaagtttattagtggtatttggatgttttatgttctttatcaaggaagcacaaaagattaactcctgtattttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG
species | Glycine max |
transcript | GLYMA16G23010.6 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGEST: gi|21675874|gb|BQ628225.1|BQ628225
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGEST: gi|120532707|gb|EH260840.1|EH260840
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGEST: gi|192321433|gb|FK011733.1|FK011733
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
tttatgttctttatcaaggaagcacaaaagattaactcctgtattttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG
gattaac putative branch site (score: 2)
ttttcatttc putative PPT
tattttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaaagatgtcactccttcaagtttattagtggtatttggatgttttatgttctttatcaaggaagcacaaaagattaactcctgtattttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG
aagaaaga
- - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - tggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctgt