1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tagatgctgggttaacgaagctatgtttttttttttaaaaactcttttatggattgtccttgctttgaagctattttctctgagcgtgatggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAGGTCAAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCCCGT
species | Glycine max |
transcript | GLYMA16G23010.5 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATGGCTGATTCTCCCCTTGCAAG GAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAGEST: gi|192293908|gb|FG986117.1|FG986117
genomic: AAATGGCTGATTCTCCCCTTGCAAGgtaaacccta ... ggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
EST: AAATGGCTGATTCTCCCCTTGCAAG GAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAGEST: gi|298176497|gb|HO026732.1|HO026732
genomic: AAATGGCTGATTCTCCCCTTGCAAGgtaaacccta ... ggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
EST: AAATGGCTGATTCT-CCCTTGCAAG GAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAGEST: gi|213588543|gb|DB957621.1|DB957621
genomic: AAATGGCTGATTCTCCCCTTGCAAGgtaaacccta ... ggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
EST: AAATGGCTGATTCTCCCCTTGCAAG GAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
genomic: AAATGGCTGATTCTCCCCTTGCAAGgtaaacccta ... ggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
tttatggattgtccttgctttgaagctattttctctgagcgtgatggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAGGTCAAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCCCGT
tattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatgctgggttaacgaagctatgtttttttttttaaaaactcttttatggattgtccttgctttgaagctattttctctgagcgtgatggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAGGTCAAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCCCGT
- gatgctg
- - - - - - - - - agctatg
- - - - - - - - - - - - - - - - - -taaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttgct