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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagatgctgggttaacgaagctatgtttttttttttaaaaactcttttatggattgtccttgctttgaagctattttctctgagcgtgatggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAGGTCAAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCCCGT

Basic information

species Glycine max
transcript GLYMA16G23010.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213616943|gb|DB959255.1|DB959255
EST:     AAATGGCTGATTCTCCCCTTGCAAG                         GAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
genomic: AAATGGCTGATTCTCCCCTTGCAAGgtaaacccta ... ggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
EST: gi|192293908|gb|FG986117.1|FG986117
EST:     AAATGGCTGATTCTCCCCTTGCAAG                         GAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
genomic: AAATGGCTGATTCTCCCCTTGCAAGgtaaacccta ... ggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
EST: gi|298176497|gb|HO026732.1|HO026732
EST:     AAATGGCTGATTCT-CCCTTGCAAG                         GAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
genomic: AAATGGCTGATTCTCCCCTTGCAAGgtaaacccta ... ggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
EST: gi|213588543|gb|DB957621.1|DB957621
EST:     AAATGGCTGATTCTCCCCTTGCAAG                         GAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG
genomic: AAATGGCTGATTCTCCCCTTGCAAGgtaaacccta ... ggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatggattgtccttgctttgaagctattttctctgagcgtgatggtatttcagGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTCGAGATCTAGGTCTAGGTCAAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCCCGT
                          tattttct  TA-rich tract