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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctctatctgaaacctcaacaacgcttcgaaattcttccttcaacacaatctaacacttttataacttcactttgcagGCTGATTCTCCCCTTGCAAG

Basic information

species Glycine max
transcript GLYMA16G23010.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213616943|gb|DB959255.1|DB959255
EST:     TGGGCACTGTCTCTGTTCCAAAACCCTAAT-C--GGTCTTCCAGAAAATG                         GCTGATTCTCCCCTTGCAAG
genomic: TGGGCACTGTCTCTGTTCCAAAACCCTAATCCTTCGTCTTCCAGAAAATGgtaagttctc ... cactttgcagGCTGATTCTCCCCTTGCAAG
EST: gi|298176497|gb|HO026732.1|HO026732
EST:     TGGGCACTGTCTCTGTTCCAAAACCCTAATCCTTCGTCTTCCAGAAAATG                         GCTGATTCT-CCCTTGCAAG
genomic: TGGGCACTGTCTCTGTTCCAAAACCCTAATCCTTCGTCTTCCAGAAAATGgtaagttctc ... cactttgcagGCTGATTCTCCCCTTGCAAG
EST: gi|213588543|gb|DB957621.1|DB957621
EST:     TGGGCACTGTCTCTGTTCCAAAACCCTAAT-C--GGTCTTCCAGAAAATG                         GCTGATTCTCCCCTTGCAAG
genomic: TGGGCACTGTCTCTGTTCCAAAACCCTAATCCTTCGTCTTCCAGAAAATGgtaagttctc ... cactttgcagGCTGATTCTCCCCTTGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttcgaaattcttccttcaacacaatctaacacttttataacttcactttgcagGCTGATTCTCCCCTTGCAAG
                                    ttataac  putative branch site (score: 2)
                                          cttcacttt  CT-rich tract
                            taacacttttataa  TA-rich tract