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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagaaagatgtcactccttcaagtttattagtggtatttggatgttttatgttctttatcaaggaagcacaaaagattaactcctgtattttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG

Basic information

species Glycine max
transcript GLYMA16G23010.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590792|gb|AW706463.1|AW706463
EST:     AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: gi|21675874|gb|BQ628225.1|BQ628225
EST:     AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: gi|192304150|gb|FG993490.1|FG993490
EST:     AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: gi|120532707|gb|EH260840.1|EH260840
EST:     AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: gi|213588543|gb|DB957621.1|DB957621
EST:     AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG                         TCACGAAGAAAACGCGCAAGAACTCCAACCCCAGGGCACTATCTTGGACT
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACT
EST: gi|120532787|gb|EH260920.1|EH260920
EST:     AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: gi|192322695|gb|FK014386.1|FK014386
EST:     AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: gi|192321433|gb|FK011733.1|FK011733
EST:     AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
EST: gi|192321434|gb|FK011734.1|FK011734
EST:     AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGG                         TCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG
genomic: AGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACAATTGAGCGGgtaatgtatt ... ttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgttctttatcaaggaagcacaaaagattaactcctgtattttcatttcagTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGGGAGTATG
                             gattaac  putative branch site (score: 2)
                                           ttttcatttc  putative PPT
                                         tattttcattt  TA-rich tract