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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtgtgtcggaacctcattatattattataaaagtgacaggtttgaaattctgatgctaatcctacttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTAATATTTGCAGCCCCTAGGTGCTCTGAAATACCAGAACTTGTGGCACTTAAGAATATCTTT

Basic information

species Glycine max
transcript GLYMA16G22850.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G22850.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G012413_T01 (Zea mays), 3'ss of exon 3
--------------gtaaagtgtgtcggaacctcattatattattataaaagtgacaggtttgaaattctgatgctaatcctacttgt--ttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTAATATTTGCAGCCCCTAGGTGCTCTGAAATACCAGAACTTGTGGCACTTAAG-AATATCTTT
                 |      ||  || || ||| | || | ||||   ||  |  |   |  | || ||  |   || |||| |  |||||||||||||||||||| ||||||||||| ||    || || ||||||||||| || |||||||||||  | || ||||||| | | | || |  | || |||
gtttgtctttaactaccatcaccttcctaaacttatt-tgttctcataagtatggaaaat--aaggtcctaatcttgtgccaactttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCTCCAAGGTGCTCTGAGCTCCCTGAACTTG-GTCGCATACGTGACATTTTT

upper sequence: GLYMA16G22850.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0302g00010.t01 (Vitis vinifera), 3'ss of exon 1
gtaaagtgtgtcggaacctcattatattattataaaagtgacaggtttgaaattctgatgctaatcctac-ttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTAATATTTGCAGCCCCTAGGTGCTCTGAAATACCAGAACTTGTGGCACTTAAGAATATCTTT
     |||  |   ||           ||||    || |  || |  | |  | |||||    | || |   | || |||||| || ||||||||| |||||||||| ||  |||||||||||||||||||||| |||||||| || || ||||| ||  ||||| ||  | |||  |||
-----gtgcttataaatgctgaatctctatttatgaactcgcaagcattagttactgatatagaccccatactcttccagGGATTGCCCAGCAGATCTGAAAGAAGGGATATCTAGCTTAATATTTGCAGCCCCAAGGTGCTCAGATATTCCAGAGCTATTGGCAATTCGGGATAATTTT

upper sequence: GLYMA16G22850.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s1235g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtaaagtgtgtcggaacctcattatattattataaaagtgacaggtttgaaattctgatgctaatcctac-ttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTAATATTTGCAGCCCCTAGGTGCTCTGAAATACCAGAACTTGTGGCACTTAAGAATATCTTT
     |||  |   ||           ||||    || | ||| |  | |  | |||||    | || |   | || |||||| || ||||||||| |||||||||| ||  |||||||||||||||||||||| |||||||| || || ||||| ||  ||||| ||  | |||  |||
-----gtgcttataaatgctgaatctctatttatgaactcacaagcattagttactgatatagaccccatactcttccagGGATTGCCCAGCAGATCTGAAAGAAGGGATATCTAGCTTAATATTTGCAGCCCCAAGGTGCTCAGATATTCCAGAGCTATTGGCAATTCGGGATAATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattattataaaagtgacaggtttgaaattctgatgctaatcctacttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTAATATTTGCAGCCCCTAGGTGCTCTGAAATACCAGAACTTGTGGCACTTAAGAATATCTTT
                                  tgctaat  putative branch site (score: 2)
                                        tcctactt  CT-rich tract
     ttataaaagt  TA-rich tract