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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTGATCGCAGCGCTGGATCCGTACCGTGTTCCTCCGTCTACGGAAGCGCCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGGgtatgtcaacgcatcttcatctttctccttctttattccttttccatccaattgtttcttttccattttctcaatttctggggtttggtttctgtgcggt...

Basic information

species Glycine max
transcript GLYMA16G22290.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4291205|gb|AI441728.1|AI441728
EST:     CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGG                         GGCAATGTTGGGAAGC
genomic: CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGGgtatgtcaac ... aaatttgaagGGCAATGTTGGGAAGC
EST: gi|298182829|gb|HO031564.1|HO031564
EST:     CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGT-CCCGAGG                         GGCAATGTTGGGAAGCNNNNNNNTTTCGGACGGGTACGAGGTTGGCTCAAA
genomic: CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGGgtatgtcaac ... aaatttgaagGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAA
EST: gi|208133813|gb|GD931802.1|GD931802
EST:     CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGG                         GGCAATGTTGGGAAGCGGGGGG-TTTCGG
genomic: CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGGgtatgtcaac ... aaatttgaagGGCAATGTTGGGAAGCGGGGGGGTTTCGG
EST: gi|120530029|gb|EH258163.1|EH258163
EST:     CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGG                         GGCAATGTTGGGAAGCNNNNNNNTTTCGGACGGGTACGAGGTTGGCTCAAA
genomic: CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGGgtatgtcaac ... aaatttgaagGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAA
EST: gi|193394268|gb|FK358987.1|FK358987
EST:     CCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGG                         GGCAATGTTGGGAAGC-GGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAA
genomic: CCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGGgtatgtcaac ... aaatttgaagGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAA
EST: gi|298180874|gb|HO022313.1|HO022313
EST:     CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGG                         GGCAATGTTGGGAAGCNNNNNNNTTTCGGACGGGTACGAGGTTGGCTCAAA
genomic: CCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGGgtatgtcaac ... aaatttgaagGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGTGATCGCAGCGCTGGATCCGTACCGTGTTCCTCCGTCTACGGAAGCGCCTTTTGCTCGATCCTTCGCCGATCTCGGAAGCATGTACGGTCCCCGAGGgtatgtcaacgcatcttcatctttctccttctttattccttttccatccaattgtttcttttccattttctcaatttctggggtttggtttctgtgcggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttttcc