1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatggattttcgtttcgttttgttaccaaatctgtttttttttttttttttgtgttctggcgattgaggttttggtgattgtttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTCGCTGTT
species | Glycine max |
transcript | GLYMA16G22060.5 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAAGAAAGGAAGACATCCTAACAACAEST: gi|208239091|gb|GE037169.1|GE037169
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAA-GAA-GGA-G-CATCCTAACAACA
EST: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCAT GTCCGAGTTCAGAGAGCAGTTCAAGAAGGAAGACATCCTAACAACA
genomic: AAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATgtatggattt ... ttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGA-G-CATCCTAACAACA
ttttttttttttttgtgttctggcgattgaggttttggtgattgtttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTCGCTGTT
tttttgttt CT-rich tract
tttttttttgtgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggattttcgtttcgttttgttaccaaatctgtttttttttttttttttgtgttctggcgattgaggttttggtgattgtttttgtttagGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAACAACAAATCCGTCGCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT