1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaccgtgttcttatctctctttggaatcagttttttttttaataattatgagatctggttttttcaatctggcgtttcgcgttctgcgttttgctttgtcgcagtcgcttaatgttttacgtttgcgttttcgttttgcgatgcgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCTAAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTC
species | Glycine max |
transcript | GLYMA16G22060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAG GTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCEST: gi|192307926|gb|FG998943.1|FG998943
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAG GTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCEST: gi|192297534|gb|FG989540.1|FG989540
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAG GTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCEST: gi|192322506|gb|FK014627.1|FK014627
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAG GTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCEST: gi|5058411|gb|AI736943.1|AI736943
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAG GTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCEST: gi|192307927|gb|FG998944.1|FG998944
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAG GTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCEST: gi|192298517|gb|FG989208.1|FG989208
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAG GTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCEST: gi|192325043|gb|FK015449.1|FK015449
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAGGCCGCCGATAGCAG GTTGAAGCGGAAAGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCEST: gi|208239091|gb|GE037169.1|GE037169
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAG GTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCEST: gi|17401598|gb|BM178380.1|BM178380
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
EST: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAG GTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAAGAAAGCTGC
genomic: ATTCTCGCCATGCCGAAAGCTAAATCCGACGCCAAAGCCGCCGATAGCAGgtaccgtgtt ... cgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGC
tcgcagtcgcttaatgttttacgtttgcgttttcgttttgcgatgcgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCTAAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTC
gcttaat putative branch site (score: 4)
ttaatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccgtgttcttatctctctttggaatcagttttttttttaataattatgagatctggttttttcaatctggcgtttcgcgttctgcgttttgctttgtcgcagtcgcttaatgttttacgtttgcgttttcgttttgcgatgcgtcgtttagGTTGAAGCGGAAGGGCGCTGGTGCTGGGAGGAAGCAATCGAGGAAAGCTGCTAAGGACCCTAACAAGCCGAAGAGACCTCCAAGCGCTTTCTTCGTTTTC
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