1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcatgattgatctgcatctttatgctaaagaatttacctaatttactgttaatccatgatgccatatattatgacaataatgcgttggtgttttttccagGTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAACTTAAATTTCAAAGCCATGTTTGCGCCATCAACACTTGGAGCC
species | Glycine max |
transcript | GLYMA16G21930.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGATGATGCATATACCTTATTGCTTCCTCATGCAAAACCAGAGGAAAAA GTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAAC
genomic: CGGATGATGCATATACCTTATTGCTTCCTCATGCAAAACCAGAGGAAAAAgtgaggcttg ... ttttttccagGTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAAC
ctgttaatccatgatgccatatattatgacaataatgcgttggtgttttttccagGTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAACTTAAATTTCAAAGCCATGTTTGCGCCATCAACACTTGGAGCC
tgttaat putative branch site (score: 3)
tgttttttcc putative PPT
atatattatgacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgattgatctgcatctttatgctaaagaatttacctaatttactgttaatccatgatgccatatattatgacaataatgcgttggtgttttttccagGTTTCAATCTCAAGAAAAATTAAGCACCACTTGGGGGTGATTTCAAGCAACTTAAATTTCAAAGCCATGTTTGCGCCATCAACACTTGGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
-catgatt
- - - - - -ctgcatc
- - - - - - - - - tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtg