Sequence
atgc intronic sequence ATGC exonic sequence...gggaaccacttttcttttgtttcaactgttttcacattagaaattcgttagtcttggtattcataataaacccaattttgttctcactttaatttttcagGCACCATTGCTCAATTGTTCGGAGCTGGCGAAAGTGAATGTTCTGTGATCATGCTTTGGACATATATTTTGGCGGCAGTAGCAGTTACCCTTTGGTCAAC
Basic information
species | Glycine max |
transcript | GLYMA16G21930.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G21930.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv04s0044g01880.t01 (Vitis vinifera), 3'ss of exon 11
gggaaccacttttcttttgtttcaactgttttcacattagaaattcgttagtcttggtattcataataaacccaattttgttctcactttaatttttcagGCACCATTGCTCAATTGTTCGGAGCTGGCGAAAGTGAATGTTCTGTGATCATGCTTTGGACATATATTTTGGCGGCAGTAGCAGTTACCCTTTGGTCAAC
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gtatggaaatacacctgaaacataattctattataatttgggtgttgatagaaaaaggattaat--tagaggcagttgtgt---------aatgtggcagGCACAATCACGCAGCTGTTTGGAGCAGGCGAGAGCGAATGTTCTGTCATCATGCTGTGGACATATGCCTTGGCGTCAGTTGCCCTCACGCTTTGGTCCAC
upper sequence: GLYMA16G21930.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv04s0044g01870.t01 (Vitis vinifera), 3'ss of exon 9
gggaaccacttttcttttgtttcaactgttttcacattagaaattcgttagtcttggtattcataataaacccaattttgttctcactttaatttttcagGCACCATTGCTCAATTGTTCGGAGCTGGCGAAAGTGAATGTTCTGTGATCATGCTTTGGACATATATTTTGGCGGCAGTAGCAGTTACCCTTTGGTCAAC
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tttgataatttcactggtttaagaaagagttgaagttcgttccttggattatatttgcctttttaatatgaaaatttgactcaactccctaatcttgcagGCACAATTATCCAGTTGTTTGGAGCGGGTGAGAGTGAATGTTCTGTTATCATGCTGTGGACATATGGCTTGGCATCAGTTTCACTCACCCTTTGGTCAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207819806|gb|GD790510.1|GD790510EST: TCAGTTCGTGCTTCTACTTCAATATGCACTTCCGCCTGCCATGAATATAG GCACCATTGCTCAATTGTTCGGAGCTGGC
genomic: TCAGTTCGTGCTTCTACTTCAATATGCACTTCCGCCTGCCATGAATATAGgtacctgact ... aatttttcagGCACCATTGCTCAATTGTTCGGAGCTGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgttagtcttggtattcataataaacccaattttgttctcactttaatttttcagGCACCATTGCTCAATTGTTCGGAGCTGGCGAAAGTGAATGTTCTGTGATCATGCTTTGGACATATATTTTGGCGGCAGTAGCAGTTACCCTTTGGTCAAC
tttttc CT-rich tract
tattcataataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gggaaccacttttcttttgtttcaactgttttcacattagaaattcgttagtcttggtattcataataaacccaattttgttctcactttaatttttcagGCACCATTGCTCAATTGTTCGGAGCTGGCGAAAGTGAATGTTCTGTGATCATGCTTTGGACATATATTTTGGCGGCAGTAGCAGTTACCCTTTGGTCAAC
- - accactt
- - - - - - - - - - - caactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacccaa