Sequence
atgc intronic sequence ATGC exonic sequenceACCAAACCTGGCACCACAAAGACTAGTGTTGATGGAGTTTTTGCTGCTGGTGATGTTCAAGATAAAAAGTATAGGCAAGCTATTACAGCTGCTGGCACTGgtaattcttgtttcataatctttgtattcaaataaattagattgttgtgttgtgatagttgtggattcatgttatttgattattcctggttttgaatttt...
Basic information
species | Glycine max |
transcript | GLYMA16G21630.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G21630.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G35460.1 (Arabidopsis thaliana), 5'ss of exon 1
ACCAAACCTGGCACCACAAAGACTAGTGTTGATGGAGTTTTTGCTGCTGGTGATGTTCAAGATAAAAAGTATAGGCAAGCTATTACAGCTGCTGGCACTGgtaattcttgtttcataatctttgtattcaaataaattagattgttgtgttgtgatagttgtg--gattcatgttatttgattattcctg--gttttgaatttt----
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ACGAAGCCTGGTACTACACAGACTAGCGTTCCCGGAGTTTTCGCTGCGGGTGATGTTCAGGATAAGAAGTATAGGCAAGCCATCACTGCTGCAGGAACTGgtta-----gttctctactttctctg---aaagaaactgctttagttagctattttagttatgttgcctagaactacttgactttgtgtgcaatatatgattttggaa
upper sequence: GLYMA16G21630.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0044g01750.t01 (Vitis vinifera), 5'ss of exon 1
ACCAAACCTGGCACCACAAAGACTAGTGTTGATGGAGTTTTTGCTGCTGGTGATGTTCAAGATAAAAAGTATAGGCAAGCTATTACAGCTGCTGGCACTGgtaattcttgtttcataatctttgtattcaaat---aaattagattgttgtgttgtgatagttgtggattc--atgttatttgattattcctggttttgaatttt
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ACGGAGCCAGGGACTACTAAAACCAGCGTTCGTGGAGTTTTTGCTGCTGGAGACGTCCAAGACAAGAAGTACAGGCAGGCTGTGACTGCTGCTGGCACTGgttagctacatttc-tactcatgcccccttgatcttatgttcatttattttcctacggtattagtcttttctaatatggtatgaacaccattggaatacaa----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16281281|gb|BI944406.1|BI944406EST: TGATGTTCAAGATAAAAAGTATAGGCAAGCTATTACAGCTGCTGGCACTG GGTGTATGGCAGCCTTGGATGCAGAACATTACTTGCAAGGGATTGGTT
genomic: TGATGTTCAAGATAAAAAGTATAGGCAAGCTATTACAGCTGCTGGCACTGgtaattcttg ... attgttgcagGGTGTATGGCAGCCTTGGATGCAGAACATTACTTGCAAGGGATTGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCAAACCTGGCACCACAAAGACTAGTGTTGATGGAGTTTTTGCTGCTGGTGATGTTCAAGATAAAAAGTATAGGCAAGCTATTACAGCTGCTGGCACTGgtaattcttgtttcataatctttgtattcaaataaattagattgttgtgttgtgatagttgtggattcatgttatttgattattcctggttttgaatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT