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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATAATCAAGGAAAAATCCTTATGTGCAAAGCTTTCTGATATGGGGATTAGCAAATGTCTTTTGGAAAATATGTCTTCTTTGGGTAATAATGCTACTGgtaagtactcctcagaagaataacgagtttgtctttttagctatggcttatggggccaacattattttctaaaattattttatttttatatttttatttg...

Basic information

species Glycine max
transcript GLYMA16G21480.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21480.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g02180.t01 (Vitis vinifera), 5'ss of exon 4
CTAATAATCAAGGAAAAATCCTTATGTGCAAAGCTTTCTGATATGGGGATTAGCAAATGTCTTTTGGAAAATATGTCTTCTTTGGGTAATAATGCTACTGgtaagtactcctcagaaga-------ataacgagtttgtctttttagct-----atg----gcttatggggccaacattattttctaaaattattttatttttatatttttatttg
 | ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||  | ||| | |   |||||||||| |||||| || |||||||||||||||| || |    ||         | |    |   ||| ||||| |     |||     |||||||||  ||    || | | ||| ||||||  |                 
TTGATAATTAAGGAAAAATCTTTATGTGCAAAGCTTTCTGATATGGGTATTAGCAAGCGCCTTGTTGGGGATATGTCTTCCTTGGGTCATCATGCTACTGgtaagtagtcttggctagttatttctgttaaacctacatctatttaggttctgcatgttatacttatggggttaatgacatctgccaaagttatttcctc----------------