1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agttgtacctgatcaagatagtgaaaatgaagttgtaagtagtggaaaacaattggtaggtagaatttcactatttcttgtccttttcatttttcttcagGCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTGGAGTTGGCAGAGAATGGAGACTTGCAAAGGATCCATGACAAATGGCTTT
species | Glycine max |
transcript | GLYMA16G21470.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTT GCCTTTCCGCGAGACTCGCCATTAACAGTTGACCTTTCAACTGCAATATTGEST: gi|58015168|gb|CX701910.1|CX701910
genomic: GTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTTgtaagtatct ... ttttcttcagGCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTG
EST: GTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTT GCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTGEST: gi|15287049|gb|BI470940.1|BI470940
genomic: GTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTTgtaagtatct ... ttttcttcagGCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTG
EST: GTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTT GCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTG
genomic: GTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTTgtaagtatct ... ttttcttcagGCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTG
aaaacaattggtaggtagaatttcactatttcttgtccttttcatttttcttcagGCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTGGAGTTGGCAGAGAATGGAGACTTGCAAAGGATCCATGACAAATGGCTTT
tttcactatttcttgt CT-rich tract
ttttcatttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgtacctgatcaagatagtgaaaatgaagttgtaagtagtggaaaacaattggtaggtagaatttcactatttcttgtccttttcatttttcttcagGCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCAACTGCAATATTGGAGTTGGCAGAGAATGGAGACTTGCAAAGGATCCATGACAAATGGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - gtacctg
- - - - - - - - gatagtg
- - - - - - - - - - - - -aatgaag
- - - - - - - - - - - - - - - - - - - gtagtgg
- - - - - - - - - - - - - - - - - - - - - - -aaaacaa