Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGGCATATAATACTCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattttctagtaaaaacagaaatctactgagaaagtcttagttgtttcttctgtatgctttactaatgtctatgtcttctatgtttcttttttcag

Basic information

species Glycine max
transcript GLYMA15G41960.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G41960.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g48790.3 (Oryza sativa), 5'ss of exon 4
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGGCATATAATACTCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattttctagtaaaaacagaaatctactgagaaagtcttagttgtttctt-ctgtatgctt-tac-taatgtctatgtcttctatgtttcttttttcag
|||||||||||| |||||||| || ||||| ||| | || || |||||||| ||||| || ||  |||| ||||| |||| ||| || || ||||||||||| |  |||  | | ||   | |||  | |  |       |  |  |  | ||   |  | ||||| ||| || | |  ||   ||     |    | || |  
ATGGCACATTATCAAGGATGTGCCTAATCCACAATTTCGCCACATAATACTGGAGAACAACGAAAACAAACCTGTGACAAACAGCAGGGATACACAAGAGgtatttatt--caattacctagagattttttatttttttatactcatgatctcaagccatctgcttgtacgtagtattcataaatttcccatcctgtcttcc--

upper sequence: GLYMA15G41960.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G127780_T02 (Zea mays), 5'ss of exon 7
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGGCATATAATACTCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattttctagtaaaaacagaaatctactgagaaagtct-tagttgtttcttctgtatgctttactaatgtctatgtcttctatgtttcttttttcag
|||||||||||| ||||||||||| ||||| ||| | || ||||||||  | |||||||||||  | || ||||| |||| ||| || |||||||||||||| | |   ||| | ||   |   | |  |  ||  |   | | |      |  ||  |  | ||    ||||    || || |     | | | |    | 
ATGGCACATTATCAAGGATGTTCCCAATCCACAATTTCGCCATATAATTTTGGAGAATAATGAGAATAAACCTGTGACAAACAGCAGGGACACACAAGAGgtattc--cttccaatacctagcaagagttcttggtattttttatgacaagtggttgagctttctaagttaattctcatttcatggcaatatatgtcaggaa

upper sequence: GLYMA15G41960.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G169116_T01 (Zea mays), 5'ss of exon 8
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGGCATATAATACTCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattttctagtaaaaacagaaatctactgagaaagtcttagttgtttcttctgtatgctttactaatgtctatgtcttctatgtttcttttttcag--
|||||||||||| ||||||||||| ||||| ||| | || ||||||||  | |||||||||||  | || ||||| |||| ||| || ||||| |||||||| | |   ||| | ||   |   | |    ||| |  | | ||    |       | |  |||||   | |   |     ||  |||    | | |   |  
ATGGCACATTATTAAGGATGTTCCCAATCCACAATTTCGCCATATAATTTTGGAGAATAATGAGAATAAACCTGTGACAAACAGCAGGGACACGCAAGAGgtattc--cttccaatacctagcaagagtgtctgtggtattttttacagcaagaggt-tgagctttctaagttaattctcatttcatggcaatatgtgaggaa

upper sequence: GLYMA15G41960.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G79270.1 (Arabidopsis thaliana), 5'ss of exon 7
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGGCATATAATACTCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtt---tgcattttctagtaaaaacagaaatctactgagaaagtcttagttgtttcttctgtatgctttactaatgtctatgtcttctatgtttcttttttcag
 |||||||| || || |||||||||||||| |||||||| ||||| ||||| ||||| |||||  |||||||||| || |  || |||||||||||||||||    |   ||   || ||     |   |  |        |     || |  |        || || |   ||  |   |||| |  || | |          
GTGGCACATCATCAAAGATGTTCCAAATCCGCAACTACGACATATCATACTAGAGAACAATGAGAACAAGCCTGTAACCAATAGCAGAGACACACAAGAGgtaacattagttccttaataggcttaaggaagtgaatcattatcaagagctaatctcatctcatactgtttaaacat---tgtccttcatatatag--------

upper sequence: GLYMA15G41960.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0085g01100.t01 (Vitis vinifera), 5'ss of exon 7
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGGCATATAATACTCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattttctagtaaaaacagaaatctactgagaaagtcttagttg-tttcttctgtatgctttactaatgtctatgtcttctatgtttcttttttcag
 |||||||| ||||| ||||||||||| || ||  | |||||||||||||| ||||| || ||  |||||||||| || |  || ||||||||||| |||||  |||      | |     |   |    |  ||    || ||  |   |||||| ||  | | || | | |     ||| || |     || ||||||||
GTGGCACATCATAAAAGATGTTCCAAACCCACAGTTGCGGCATATAATACTTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgcacaacaaactgtt--ctctatctcatagaatttgttttcttcaatttcttgtgc-ttccttccaactaatcttgttttgttgtcatcctttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333130|gb|FK026459.1|FK026459
EST:     TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattt ... cttttttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
EST: gi|22928583|gb|BU545722.1|BU545722
EST:     TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattt ... cttttttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
EST: gi|11689196|gb|BF596872.1|BF596872
EST:     TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattt ... cttttttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
EST: gi|26057767|gb|CA800681.1|CA800681
EST:     TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattt ... cttttttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
EST: gi|19348112|gb|BM892644.1|BM892644
EST:     TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattt ... cttttttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
EST: gi|14259122|gb|BG882030.1|BG882030
EST:     TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattt ... cttttttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
EST: gi|27426107|gb|CA937627.1|CA937627
EST:     TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattt ... cttttttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
EST: gi|15199840|gb|BI424037.1|BI424037
EST:     TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAG                         GTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG
genomic: TCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattt ... cttttttcagGTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTTAAGAATTATGTG