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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaattggatgtgaaggttacttgttgaatgcaagtgttaagtgatttaaaattggttgtttcagttctaaagtaatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA

Basic information

species Glycine max
transcript GLYMA15G23220.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os08g41300.1 (Oryza sativa), 3'ss of exon 2
--ctaattggatgtgaaggttacttgttgaatgcaagtgttaagtgatttaaaattggttgtttcagttctaaagtaatcatgttttgtgttt-tttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
   | ||||  |      ||      | | || |  || |  |   ||    | ||||    ||   |   | | |||       ||||   |  || | ||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
atgttattgctttcattagtgggc-atggcatcctcgtttgtaactatggctatttggcatatttgctg--agactaacttcaacttgttcatacttgtccagCCAAGCTGGCGCAGGCCCAAGGGTATTGACTCCCGTGTCAGGAGAAAGTTCAAGGGATGCACCTTGATGCCCAACATTGGTTACGGCTCAGACAAGAAGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os09g32500.1 (Oryza sativa), 3'ss of exon 2
-ctaattggatgtgaaggttacttgttgaatgcaagtgttaagtgatttaaaattggttgtttcagttctaaag-taatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
  | ||    | |  ||  | | |  |     |  |   |   |  |      ||| |||| |     | |  | | ||  |  ||||   | ||| |  || ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| |
ttttatatcgttttcagtctgcatcctagtcac--gccatgtattgtcagtttttgtttgtgtggacacaagggctcattttcatttgcactgtttctgtagACAAGCTGGCGCAGGCCAAAGGGTATTGACTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACCTTGATGCCCAACATTGGATATGGTTCTGACAAGAAGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os09g32520.1 (Oryza sativa), 3'ss of exon 2
ctaattggatgtgaaggttacttgttgaatgcaagtgttaagtgattta----aaattggttgtttcagttctaaagtaatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
   ||   || |    |||  |||||      | || |   |  || |      ||   |   | | | || ||| |   | |  | |   |||   | || |  |||||||||||||||| ||||||||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| || |||||||| |
-ggatcatattttggtgttttttgttcttaatatgtttcgtgctatgtttgccgaagcagcaatctgatttgtaatg-gtttacttctaccgttacgtgtagA--CAAGCTGGCGCAGACCAAAGGGTATTGACTCACGTGTCAGGAGGAAGTTCAAGGGATGCACATTGATGCCCAATATTGGATATGGTTCGGACAAGAAGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os09g32532.2 (Oryza sativa), 3'ss of exon 1
ctaattggatgtgaaggttacttgttgaatgcaagtgttaagtgatttaaaattggttgtttcagttctaaagtaatcatgttttgtgttttttt---tacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
       ||||    | ||     |||||| ||  | |    | ||||    |  ||  |  |     |||| |     |  ||| |  ||   |   |  || ||||||||||||| || |||||||| || || |||||||||||||||||||| ||||||||||||||||| || ||||| ||||| || |||||||| |
---tgctgatgatttgtttctaacttgaatacacttctccgcttatttcttttgtgtgctgccttgcttaaatttggtgttctttttacttccctatatgtagACAAGCTGGCGCAGGCCAAAGGGTATCGACTCCCGTGTCAGGAGAAAGTTCAAGGGATGCACTTTGATGCCTAATATTGGCTATGGTTCTGACAAGAAGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G155931_T03 (Zea mays), 3'ss of exon 1
-ctaattggatgtgaaggttacttgttgaatgcaagtgttaagtgatt-taaaattggttgtttcagttctaaagtaatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
   |      | |  || ||  || |   || | | |  |  ||  || |     |   |     | |||||| ||  | |  | |||  || ||| ||||||||||||||||||| || ||||||||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| || ||||||   |
tgcagacatctattgagcttgtttttcttataccatttctttgtatttatttccctccatagagtaattctaa-gttctgacttgttg-attctttgtacagCCAAGCTGGCGCAGGCCAAAGGGTATTGACTCCCGTGTCAGGAGGAAGTTCAAGGGATGCACCTTGATGCCCAACATTGGTTATGGTTCTGACAAGTCGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: AC197246.3_FGT003 (Zea mays), 3'ss of exon 1
ctaattggatgtgaaggttacttgttgaatgcaagtgttaagtgatttaaaattggttgtttca-gttctaaag---taatcatg-ttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
     |||||||  |    |  | ||       |        |   | |  ||   |  ||  |  ||||| ||   |||  |||  | | | || ||| ||||||||||||||||||| || ||||||||||| || ||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| |||||   ||
-----tggatgtttaacccatatctttgtgtttatctccctctatatcattatctataattctatattctagaggactaactatgactgtttattgtttgtacagCCAAGCTGGCGCAGGCCAAAGGGTATTGACTCCCGTGTCAGGAGGAAGTTCAAGGGATGCACCTTGATGCCCAACATTGGTTACGGCTCTGACAAATCAA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G115901_T01 (Zea mays), 3'ss of exon 2
ctaattggatgtgaaggtt----acttgttgaatgcaagtgttaa-gtgatttaaaattgg---ttgtttcagttctaaagtaatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
         |||| |  ||    | | ||||  | |   | || | || || ||  ||      |  | | | || |||  ||||  |        | |||| | ||||||||||||||||| ||||||||||| || || ||||||||| | |||||||| |||||||| |||||||| |||||||| |||||||| |||||||| |
--------gtgtgcaactttctaattcgttgggtccctatatttatgtcatctagcataaacattcctattaattttaagctaattttaccaatgctgttttctgcagCCAAGCTGGCGCAGGCCCAAGGGTATCGACTCCCGTGTCAGGCGGAAGTTCAAGGGATGCACCTTGATGCCTAACATTGGATATGGCTCTGACAAGAAGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G065868_T04 (Zea mays), 3'ss of exon 2
ctaattggatgtgaaggttacttgttgaatgcaagtgttaagtgatttaaaattg-gttgtttcagttctaaagtaatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
 |      || |      | | |    | || |  | || ||| || |  | | |  ||  |     |  ||| ||||| || |     | |||| |  |||||||||||||||| ||||||||||| || || || |||||| | |||||||| |||||||| ||||||||||||||||| |||||||| |||||||| |
atgggcacatctttccaatgcattggcactgtatat-ttgagtcatctgcactagcatttctgtctgttgaaactaatcttgctgacaatgttttctgtagCCAAGCTGGCGCAGGCCCAAGGGTATCGACTCCCGCGTCAGGCGTAAGTTCAAGGGATGCACCTTGATGCCCAACATTGGATATGGCTCCGACAAGAAGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G047971_T01 (Zea mays), 3'ss of exon 2
ctaattggatgtgaaggttacttgttgaatgcaagtgttaagt--gatttaaaattggttgtttcagttctaaagtaatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
   | | ||| |       |    |||    ||  | |  |||   | |  | |    ||  | |   |   |  ||||  ||       | |||| |  ||||||||||||| || ||||||||||| || || || |||||| | |||||||| |||||||| ||||||||||||||||| || ||||| |||||||| |
-gtagtagatatcctataaaaggattgg-cacagctatccagttcaactgcataaacatttctgctcgttgcagctaattttgccgataatgttttgtgtagCCAAGCTGGCGTAGGCCCAAGGGTATCGACTCCCGCGTCAGGCGGAAGTTCAAGGGATGCACCTTGATGCCCAACATTGGATACGGCTCTGACAAGAAGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0260g00080.t01 (Vitis vinifera), 3'ss of exon 1
ctaattgg-atgtgaaggttacttgttgaatgcaagtgttaagtgatttaaaattggttgtttcagttctaaagtaatcatgttt-tgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
 |  ||||  ||  |   |  |||||||| |     | |||| ||    | |||||| | |   ||||    | ||||    | | |   ||| | | |||| | | |||||| || |||||||||||||||||||| || ||||| |||||||| |||||   | | |||||||||||||||||||| ||||||||||| |
tttgttggtgtgctatcttggcttgttga-tattccttttaaatggagaacaattggat-tgctagtttgctactaatagaatgtgtacttttctgtgacagTCTAACTGGCGAAGGCCCAAGGGTATTGATTCTCGGGTGAGGAGGAAGTTCAAGGGATGTGTTCTCATGCCCAACATTGGTTATGGTTCAGACAAGAAGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S505_19V6.1 (Physcomitrella patens), 3'ss of exon 1
ctaattggatgtgaaggttacttgttgaatgcaagtgt-taagtgatttaaaattggttgtttcagttctaaagtaatcat--gttttgtgtttttt-ttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
    |||    ||  | |||    ||||| |    ||    | |  ||     |    |||  ||  ||   ||  | | |  | |  || || ||| || ||| ||| |||| | || || ||||||||||| ||| | ||  |  | ||||| || ||    ||||||||||||||||| ||||| |||||| ||||||| |
----ttgatgttgtggtttagggtttgaacgtgcctgcactacttgttgtttgtgaaatgtcacatctcatgagagaactttgggtgagtattgtttgtttcagACAAACTGGAGGAGGCCTAAGGGTATTGACTCTAGGGTTCGCCGCAAGTTTAAGGGCACTACTTTGATGCCCAACATCGGTTACGGCTCAAACAAGAAGA

upper sequence: GLYMA15G23220.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S98_19V6.1 (Physcomitrella patens), 3'ss of exon 1
-----ctaatt-ggatgtgaaggttacttgttgaatgcaagtgttaagtgatt-taaaattggttgtttcagttctaaagtaatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
     || ||| || | |||| |   | |    | ||    | |||| |  || ||    || |      |||| |           | | ||| | | | |  ||| | |  ||| | || || |||||||| |||||| | ||  |  | |||||||||||    ||||||||||||||||||||||| |||||| ||||||| |
tgcggctgatttggttctgaacgagccctcagaattgatttttttaaattgttgtacggctgctgacgagagttttggc-------cggtgtgtatgtctctgtcagACGAATTGGAGGAGGCCAAAGGGTATCGATTCTAGAGTTCGTCGTAAGTTCAAAGGCACTACTTTGATGCCCAACATTGGTTACGGCTCAAACAAGAAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312449|gb|FK004963.1|FK004963
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|213615187|gb|DB964995.1|DB964995
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|151396552|gb|EV266429.1|EV266429
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|214008304|gb|DB989846.1|DB989846
EST:     CGTCAAGAAGTTAATACGCCCCCAGAGTGATCGCAA-ATGGGGGGTCAAG                         CCAAGCTGACGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: CGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGAT-CTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|213618252|gb|DB973022.1|DB973022
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|208088282|gb|GD889450.1|GD889450
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|209713390|gb|BW681458.1|BW681458
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|207693952|gb|GD674705.1|GD674705
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCGGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|7285337|gb|AW597824.1|AW597824
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|151396027|gb|EV265904.1|EV265904
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCGAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|192312557|gb|FK005015.1|FK005015
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|193421574|gb|FK391833.1|FK391833
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|6455784|gb|AW186467.1|AW186467
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|192294465|gb|FG987394.1|FG987394
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|298172321|gb|HO019361.1|HO019361
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|151411033|gb|EV280844.1|EV280844
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|6726245|gb|AW310599.1|AW310599
EST:     CGTCTAA-AAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: CGTC-AAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|151409140|gb|EV278948.1|EV278948
EST:     AGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: AGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|213604688|gb|DB960467.1|DB960467
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|209698284|gb|BW678042.1|BW678042
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATAGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|151410458|gb|EV280273.1|EV280273
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|192295347|gb|FG986001.1|FG986001
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|21675989|gb|BQ628340.1|BQ628340
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|192315406|gb|FK009208.1|FK009208
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|31470806|gb|CD412834.1|CD412834
EST:     GCGTCAAGAAGTTTATACGCCCCCAGACTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|207791948|gb|GD765954.1|GD765954
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|298164575|gb|HO014220.1|HO014220
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|10256383|gb|BE824149.1|BE824149
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|192315407|gb|FK009209.1|FK009209
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATTTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|24135772|gb|BU926291.1|BU926291
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|207792304|gb|GD764210.1|GD764210
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGG
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGG
EST: gi|18040909|gb|BM309203.1|BM309203
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|192312448|gb|FK004962.1|FK004962
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|120532557|gb|EH260690.1|EH260690
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|7146432|gb|AW508354.1|AW508354
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|192326197|gb|FK016989.1|FK016989
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATCCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|18711864|gb|BM522615.1|BM522615
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|7640133|gb|AW734441.1|AW734441
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCGAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
EST: gi|120530052|gb|EH258186.1|EH258186
EST:     GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAG                         CCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC
genomic: GCGTCAAGAAGTTTATACGCCCCCAGAGTGATCGCAAGATCTCCGTCAAGgttagttagt ... ttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaaattggttgtttcagttctaaagtaatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA
                    ttctaaa  putative branch site (score: 2)
                                    ttttgtgtttttttt  putative PPT
                                    ttttgtgtttttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctaattggatgtgaaggttacttgttgaatgcaagtgttaagtgatttaaaattggttgtttcagttctaaagtaatcatgttttgtgttttttttacagCCAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGCTCAGACAAGAAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - gtgaagg
- - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt