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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttccctgaaaacgaagtctttgttccatgtatgagttgagatgtgtgatctg...

Basic information

species Glycine max
transcript GLYMA13G41960.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41960.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g66940.1 (Oryza sativa), 5'ss of exon 1
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttc----cctgaaaacgaagt--ctttgttccatgtatgagttgagatgtgtgatctg
||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||  | ||  || |||||  |||| |||||||     ||| ||  |       |||| | |    | |      || ||  | | | |     |||   | || |    |  ||||||          |    | | |     
CCTCCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCCGACATGCTCCTCACCCACGCCGAGCTCAACGTCGAGCTCATCAAGAGGgtaagccccccgctgatctccttatcccccctccgtgttcttctcatctccgcgatctgcggaggaggcagttccgttccacccg-atcccgtcgcgcgcg-----

upper sequence: GLYMA13G41960.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G086845_T02 (Zea mays), 5'ss of exon 1
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttccctgaaaacgaagtctttgttccatgt-atgagttgagatgtgtgat-ctg
||| ||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||   |||| || |||||  |||| |||||||     ||| |        | |      |     | ||| ||    |      |   |||     |   | |||    ||  |  ||  |  || |    |  | |||
CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagccacgccacgcca--cgccacggtaacccatccttggtgatcctcgcccccgtgccttcacgccccgcgatctgcggacagccttattgctg

upper sequence: GLYMA13G41960.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G026969_T01 (Zea mays), 5'ss of exon 1
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttccctgaaaacgaagtctttgttccatgtatgagttgagatgtgtgatctg----
||| ||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||   |||| || |||||  |||  |||||| |    ||| |    |    || | ||   | ||    |   ||       | || || |||              | |  |   ||| |      || |  |       
CCTGCGCGCCGACGGCGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCCGACATGCTCCTCACTGCCGACGAGCTCAACGTCGGGCTCATCCGGAGGgtaag----tcaagccgccctggcccttgcttggcgatccccgtgccttcccgtgatccgcggacagccatactgtaactgattgaccccgtctagtggcagca

upper sequence: GLYMA13G41960.2 (Glycine max), 5'ss of exon 1
lower sequence: AT1G06030.1 (Arabidopsis thaliana), 5'ss of exon 1
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttccctgaaaacgaagtctttgttccatgtatgagttgagatgtgtgatctg
 || ||  | ||||| || || ||||| ||||| ||| | || ||||||||||| ||||| |||  ||| || |||||||| |||||||| |||||||| ||| | |   |    || | | | || | |    ||  ||| ||  |||| | ||     ||  |  ||| |  || | |   || |  ||   |     
TCTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGCTTCTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCgtacgtaaaat----ctttatgatctctgttttcaagatttcaagattttacttgttttggagat--ttgatgaatatttttctttatttggcag-----

upper sequence: GLYMA13G41960.2 (Glycine max), 5'ss of exon 1
lower sequence: AT3G59480.1 (Arabidopsis thaliana), 5'ss of exon 1
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttccctgaaaacgaagtctttgttccatgtatgagttgagatgtgtgatctg------------------------------------------------------------------------------
 ||| |  | || || || |||||||||||||||||| | ||||| || ||||| |||||||||   ||||| || |||||||| ||  |||||||||||||| |    ||||   | |  | | | | | |  |  |    ||  | ||   ||    ||         ||  ||    ||   | | |   | ||                                                                                 
ACTAAGATCTGATGGAGAACGTGAGTTCATGTTCTACCGGAACCCTAGTGCCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTgtacgttatttttatttttaattaatatat-gacacgtaggcaaattcttttttgggtccgtgtctcacatttaattagcgaacggtgctacatcattaacgtaacggttgttggtatacgtaacgtagatgtcaagttaggttaatgagtgctctgttttgtttttgttttacacag

upper sequence: GLYMA13G41960.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttccctgaaaacgaagtctttgttccatgtatgagttgagatgtgtgatctg
 || ||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||| || ||||| || || ||||| ||||| |||||  |||| ||| |  |||| | | |||      | |   |  || | | |  | ||| || | | ||   ||    |  ||   |          ||| | |    | 
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttttccctttagaattgagaagattctcggagatcttccatggatttctctcttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193611344|gb|FK564080.1|FK564080
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|18725060|gb|BM523590.1|BM523590
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|5688216|gb|AI941231.1|AI941231
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCANAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|14990297|gb|BI315970.1|BI315970
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|208223142|gb|GE025689.1|GE025689
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATC
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATC
EST: gi|193650834|gb|FK600353.1|FK600353
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|9439759|gb|BE440273.1|BE440273
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|9820785|gb|BE556295.1|BE556295
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|7232470|gb|AW567825.1|AW567825
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|7146098|gb|AW508020.1|AW508020
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTGTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|193641860|gb|FK591104.1|FK591104
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|208118279|gb|GD917346.1|GD917346
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|193699161|gb|FK637586.1|FK637586
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|193698637|gb|FK637160.1|FK637160
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|298171183|gb|HO016215.1|HO016215
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|192319141|gb|FK010649.1|FK010649
EST:     GCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: GCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|58014748|gb|CX701490.1|CX701490
EST:     CCGACATGCTCNTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|208129218|gb|GD928854.1|GD928854
EST:     CTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|24205894|gb|BU965147.1|BU965147
EST:     CCGACATGCTCCTAAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAAGTTT-CCATTACGGATCAATCAGTTTGATCGTGAAGCCATGCAG
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAA-GTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAG
EST: gi|10709895|gb|BF009619.1|BF009619
EST:     CCGACATGCTCCTCAAGCCCTAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTATCCAT
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCAT
EST: gi|4396650|gb|AI495647.1|AI495647
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCANAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|208081520|gb|GD884708.1|GD884708
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|4290127|gb|AI441574.1|AI441574
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCCAGTTTGATCGTG-AGCCATGCAG
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATC-AGTTTGATCGTGGAGCCATGCAG
EST: gi|4290817|gb|AI437531.1|AI437531
EST:     TCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: TCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|207800927|gb|GD774672.1|GD774672
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|207833025|gb|GD805258.1|GD805258
EST:     CCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|254325052|gb|GR834477.1|GR834477
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|13563413|gb|BG551642.1|BG551642
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGT
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGT
EST: gi|254334927|gb|GR844712.1|GR844712
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|207727232|gb|GD701154.1|GD701154
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|4397352|gb|AI496349.1|AI496349
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCANAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|208289752|gb|GE088872.1|GE088872
EST:     CTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|207756787|gb|GD730571.1|GD730571
EST:     CTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|26043761|gb|CA782155.1|CA782155
EST:     CGACATGCTCCTC-CCCTCCAAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CGACATGCTCCTCAAGC-CCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|298191640|gb|HO039119.1|HO039119
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|7924392|gb|AW830418.1|AW830418
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|193474326|gb|FK442017.1|FK442017
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|7145969|gb|AW507891.1|AW507891
EST:     CCAACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAGAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|37993969|gb|CF805715.1|CF805715
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|208167311|gb|GD963073.1|GD963073
EST:     CTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCAATGCAG
genomic: CTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCA-TGCAG
EST: gi|193489457|gb|FK456272.1|FK456272
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|33388318|gb|CA851525.1|CA851525
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|17021831|gb|BM092865.1|BM092865
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|58024006|gb|CX710747.1|CX710747
EST:     CGACATGTC-CCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CGACATG-CTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|120533620|gb|EH261753.1|EH261753
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|6454438|gb|AW185121.1|AW185121
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTNTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|4290951|gb|AI437550.1|AI437550
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCANAAGTTTTCCATTACGGANTCAATCAGTTTG-TCGTGGAGCCATGCAG
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGA-TCAATCAGTTTGATCGTGGAGCCATGCAG
EST: gi|207831993|gb|GD803867.1|GD803867
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|193354163|gb|FK319791.1|FK319791
EST:     CCCGTAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCCG-AAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|193532651|gb|FK489769.1|FK489769
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|120534180|gb|EH262313.1|EH262313
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|193308789|gb|FK277753.1|FK277753
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|208042841|gb|GD838719.1|GD838719
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|207765051|gb|GD735408.1|GD735408
EST:     TGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: TGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|254326600|gb|GR841192.1|GR841192
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|254325410|gb|GR838291.1|GR838291
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|18848757|gb|BM567869.1|BM567869
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|15204058|gb|BI426826.1|BI426826
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|193441368|gb|FK410049.1|FK410049
EST:     CGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTTGGAGCCATAGCA
genomic: CGACATGCTCCTCAAGCCCGAAGAACTCAATCTC-GAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCG-TGGAGCCAT-GCA
EST: gi|193655388|gb|FK596678.1|FK596678
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|26059901|gb|CA802815.1|CA802815
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|213599338|gb|DB972280.1|DB972280
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAG
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAG
EST: gi|193672028|gb|FK614646.1|FK614646
EST:     CCGACATGTTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|33388109|gb|CA851316.1|CA851316
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCGTGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
EST: gi|6747676|gb|AW318067.1|AW318067
EST:     CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCT                         GCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA
genomic: CCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatct ... accttttcagGCAAAAGTTTTCCATTACGGATCAATCAGTTTGATCGTGGAGCCATGCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttccctgaaaacgaagtctttgttccatgtatgagttgagatgtgtgatctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacga