1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtggtagaggaatttcccttggatcccacttataagaccaaataagaaattgcttattttgtctgcacataaatttgctgacaaattgttctgtttcagGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAATCATGGCTTCAAGACAATCAAATCCTTCTCGGAGATCTAAGACCAATT
species | Glycine max |
transcript | GLYMA13G35120.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTATTTGTCACTGATGTATATCAAGAAGCCACAGCTGCAACGGCTGCAG GTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAEST: gi|15337282|gb|BI497938.1|BI497938
genomic: TTTATTTGTCACTGATGTATATCAAGAAGCCACAGCTGCAACGGCTGCAGgtatgaatgt ... tctgtttcagGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACA
EST: TTTATTTGTCACTGATGTATATCAAGAAGCCACAGCTGCAACGGCGGCAG GTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAEST: gi|208249709|gb|GE045444.1|GE045444
genomic: TTTATTTGTCACTGATGTATATCAAGAAGCCACAGCTGCAACGGCTGCAGgtatgaatgt ... tctgtttcagGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACA
EST: TTTATTTGTCACTGATGTATATCAAGAAGCCACAGCTGCAACGGCTGCAG GTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAEST: gi|193384375|gb|FK351837.1|FK351837
genomic: TTTATTTGTCACTGATGTATATCAAGAAGCCACAGCTGCAACGGCTGCAGgtatgaatgt ... tctgtttcagGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACA
EST: TTTATTTGTCACTGATGTATATCAAGAAGCCACAGCTGCAACGGCTGCAG GTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACA
genomic: TTTATTTGTCACTGATGTATATCAAGAAGCCACAGCTGCAACGGCTGCAGgtatgaatgt ... tctgtttcagGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACA
agaaattgcttattttgtctgcacataaatttgctgacaaattgttctgtttcagGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAATCATGGCTTCAAGACAATCAAATCCTTCTCGGAGATCTAAGACCAATT
tgctgac putative branch site (score: 2)
ttctgtttc putative PPT
acataaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtggtagaggaatttcccttggatcccacttataagaccaaataagaaattgcttattttgtctgcacataaatttgctgacaaattgttctgtttcagGTTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAATCATGGCTTCAAGACAATCAAATCCTTCTCGGAGATCTAAGACCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC