1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttcctgtgagtctcgccctctctctccctctctctctctctctttgtgatgtgtgtgaatgtgattgattaattatgtttggcttttgagccaattgaattattggtatgtgtagGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAATGATGTCGAAGCT
species | Glycine max |
transcript | GLYMA13G16650.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|4290118|gb|AI438023.1|AI438023
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|4290118|gb|AI438023.1|AI438023
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|4290118|gb|AI438023.1|AI438023
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|4290118|gb|AI438023.1|AI438023
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|4290118|gb|AI438023.1|AI438023
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|15812856|gb|BI785131.1|BI785131
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAG GACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGTEST: gi|24135891|gb|BU926401.1|BU926401
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGgttcctgtga ... gtatgtgtagGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGG
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|24135891|gb|BU926401.1|BU926401
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|24135891|gb|BU926401.1|BU926401
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|24135891|gb|BU926401.1|BU926401
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|24135891|gb|BU926401.1|BU926401
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|24135891|gb|BU926401.1|BU926401
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|209718991|gb|BW657910.1|BW657910
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGTTCAATCTAATTTTGCCAGG TEST: gi|209718991|gb|BW657910.1|BW657910
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGTTCAATCTAATTTTGCCAGG TEST: gi|209718991|gb|BW657910.1|BW657910
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGTTCAATCTAATTTTGCCAGG TEST: gi|209718991|gb|BW657910.1|BW657910
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGTTCAATCTAATTTTGCCAGG TEST: gi|209718991|gb|BW657910.1|BW657910
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGTTCAATCTAATTTTGCCAGG TEST: gi|209718991|gb|BW657910.1|BW657910
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGTTCAATCTAATTTTGCCAGG TEST: gi|18041027|gb|BM309321.1|BM309321
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|18041027|gb|BM309321.1|BM309321
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|18041027|gb|BM309321.1|BM309321
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|18041027|gb|BM309321.1|BM309321
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|18041027|gb|BM309321.1|BM309321
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG TEST: gi|18041027|gb|BM309321.1|BM309321
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
EST: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGG T
genomic: CTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCA-Ggttcctgtga ... gtatgtgtag-
gtgattgattaattatgtttggcttttgagccaattgaattattggtatgtgtagGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAATGATGTCGAAGCT
gattaat putative branch site (score: 3)
tgattaattatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctgtgagtctcgccctctctctccctctctctctctctctttgtgatgtgtgtgaatgtgattgattaattatgtttggcttttgagccaattgaattattggtatgtgtagGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAATGATGTCGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA