1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttttctgagatttactaaacttgttagtaatggtgttctattttcttgaatatgctctggtatgtatacttgttttcagtgattacctctgccaaacttggttttatcttggcagGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCTGATTCAGCCAGTTTGCCCTATGGTTGGAGTAGATAT
species | Glycine max |
transcript | GLYMA13G16170.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTGTTGGTGGCTATAAATG GCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTAEST: gi|213594478|gb|DB973663.1|DB973663
genomic: GTTGTTGGTGGCTATAAATGgtatttttct ... atcttggcagGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTA
EST: AATACAAAGAAGCTCTATTCGGAAATATTTGTTGTTGGTGGCTATAAATG GCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTAEST: gi|209699335|gb|BW664054.1|BW664054
genomic: AATACAAAGAAGCTCTATTCGGAAATATTTGTTGTTGGTGGCTATAAATGgtatttttct ... atcttggcagGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTA
EST: AATACAAAGAAGCTCTATTCGGAAATATTTGTTGTTGGTGGCTATAAATG GCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTA
genomic: AATACAAAGAAGCTCTATTCGGAAATATTTGTTGTTGGTGGCTATAAATGgtatttttct ... atcttggcagGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTA
tatgtatacttgttttcagtgattacctctgccaaacttggttttatcttggcagGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCTGATTCAGCCAGTTTGCCCTATGGTTGGAGTAGATAT
ttttatctt CT-rich tract
ttttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttctgagatttactaaacttgttagtaatggtgttctattttcttgaatatgctctggtatgtatacttgttttcagtgattacctctgccaaacttggttttatcttggcagGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCTGATTCAGCCAGTTTGCCCTATGGTTGGAGTAGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG