1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aagtgtttttatcgtgcataatacacatacgtatataattaatttttcctctccaattttcttttaacttctgacatcaatgtaaatctaaccttggcagGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAG
species | Glycine max |
transcript | GLYMA12G08980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAG GTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTEST: gi|19935171|gb|BQ080201.1|BQ080201
genomic: GATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGgtacctcttg ... accttggcagGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTT
EST: GATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAG GTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTEST: gi|17021918|gb|BM092952.1|BM092952
genomic: GATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGgtacctcttg ... accttggcagGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTT
EST: GATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAG GTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTEST: gi|192300745|gb|FG989687.1|FG989687
genomic: GATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGgtacctcttg ... accttggcagGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTT
EST: GATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAG GTCCAGGGGTGGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTG
genomic: GATGGGTATGCGTCAGCTACGCTTTAGAGACATGGCTCGCGATATTTTAGgtacctcttg ... accttggcagGTCCAGGG-TGGGG-TCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTG
ttcctctccaattttcttttaacttctgacatcaatgtaaatctaaccttggcagGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAG
atctaac putative branch site (score: 2)
aattttcttttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgtttttatcgtgcataatacacatacgtatataattaatttttcctctccaattttcttttaacttctgacatcaatgtaaatctaaccttggcagGTCCAGGGTGGGGTCGTTATTTTGTCGGCCCAATTCAATTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - tgcataa
- - - - - - - - - - - -cacatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgta