Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCGTGCTGAGGCTCACTTCTCTCACGGGATAGCAGAGAACTTAGAAGATCCTAAATATGCTCATTACAGATACTGGTCTAATCCACTTGAAACCAAgtatgtatattcatgaaatacttttgactagtttttccttaaaagattcagtggcattcctttaattttgacacaacttttcatagttattcaagttccc...

Basic information

species Glycine max
transcript GLYMA12G08920.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08920.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0061g01110.t01 (Vitis vinifera), 5'ss of exon 5
TGAAGCGTGCTGAGGCTCACTTCTCTCACGGGATAGCAGAGAACTTAGAAGATCCTAAATATGCTCATTACAGATACTGGTCTAATCCACTTGAAACCAAgtatgtatattcatgaaatacttttgactagtttttccttaaaagattcagtggcattcctttaattttgacacaacttttcatagttattcaagttccc-
|| | |||||||||||||| || ||||| || ||||| || || ||||| |||||||||||||| ||||| |  |||||||| |||||||| || |||||||  ||||   ||   ||  |||  ||  |  ||     ||||        |    ||     | ||| |    |   |   ||| | ||    ||| |  
TGCAACGTGCTGAGGCTCAGTTTTCTCATGGAATAGCTGATAATTTAGATGATCCTAAATATGCCCATTATAAGTACTGGTCCAATCCACTGGAGACCAAgtgagtatccacacctaa--cttcggaagaagttgcatataaacaggcacatatagttgaaacattttagggtgatactcagatactgatatgtgtttcag