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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatctctttctctcctaattatttatccttcaagattgttggaattgaaagcaaacgtcaaagttttttaatgtgttatccatcttttttaattattattctattatagGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTGCGGAAGTGACAAATCTACAACCAAAGGCTTTGTTAAGTCATATAAAAAC

Basic information

species Glycine max
transcript GLYMA12G08820.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319564|gb|FK009546.1|FK009546
EST:     GATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAA                         GTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTG
genomic: GATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAAgtatgcatct ... tctattatagGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTG
EST: gi|192319565|gb|FK009547.1|FK009547
EST:     GATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAA                         GTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTG
genomic: GATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAAgtatgcatct ... tctattatagGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTG
EST: gi|151398851|gb|EV268722.1|EV268722
EST:     GATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAA                         GTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTG
genomic: GATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAAgtatgcatct ... tctattatagGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTG
EST: gi|209697340|gb|BW675485.1|BW675485
EST:     GATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAA                         GTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTG
genomic: GATCTGATTTGTTCAACCAAGGGGACTGAAGCTTGGGTTCATAAACTAAAgtatgcatct ... tctattatagGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtcaaagttttttaatgtgttatccatcttttttaattattattctattatagGTGGGAAGGGCTTAAAATTTTCTTGGCGAAAGATAGAACACCTCTCTACTGCGGAAGTGACAAATCTACAACCAAAGGCTTTGTTAAGTCATATAAAAAC
                                ttttaat  putative branch site (score: 3)
                                         ttattct  putative PPT
         ttttttaatgtgttat  TA-rich tract