1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgtttgcaatggtgtagatagtagattcttaacttcattttttttatatttataaatgtgttgtcatttaaatgattctctgatttgtctttttgacagGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGC
species | Glycine max |
transcript | GLYMA12G08770.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATC GATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAEST: gi|19346174|gb|BM891054.1|BM891054
genomic: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATCgtgagtaaat ... tttttgacagGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAA
EST: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATC GATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAEST: gi|58017761|gb|CX704503.1|CX704503
genomic: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATCgtgagtaaat ... tttttgacagGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAA
EST: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATC GATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAEST: gi|58014309|gb|CX701051.1|CX701051
genomic: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATCgtgagtaaat ... tttttgacagGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAA
EST: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATC GATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAEST: gi|51335007|gb|CO978873.1|CO978873
genomic: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATCgtgagtaaat ... tttttgacagGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAA
EST: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATC GATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAA
genomic: ATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGTAATCgtgagtaaat ... tttttgacagGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAA
tatatttataaatgtgttgtcatttaaatgattctctgatttgtctttttgacagGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGC
ctctgat putative branch site (score: 4)
tttgtcttttt CT-rich tract
tcatttaaatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtttgcaatggtgtagatagtagattcttaacttcattttttttatatttataaatgtgttgtcatttaaatgattctctgatttgtctttttgacagGATTGGGAGATTATTAATGACTTGAGAATTGACATGGCTCGATTACAGCAAAGGATGAATAACATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
-tgtttgc
- - - - aatggtg
- - - - - - - - - - - - - - - - -cttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg