1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaattagcatctctctctctctctctctctctctctctctctctctctctctctctctctgttacgcagaatattcatttccgattaggcgattattttaaatcataatttgtggttgctctattagCAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGATCCAGTACTCCGAGAAGTACTTCGATGACACTTATGAATATAG
species | Glycine max |
transcript | GLYMA12G08760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCATTTCTCAG CAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGAEST: gi|192324097|gb|FK019388.1|FK019388
genomic: CTCATTTCTCAGgtaattagca ... gctctattagCAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGA
EST: ACTATTTCGCTCTCAATTCTCATTTCTCAG CAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGAEST: gi|192317957|gb|FK010235.1|FK010235
genomic: ACTATTTCACTCTCAATTCTCATTTCTCAGgtaattagca ... gctctattagCAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGA
EST: ACTCTCAATTCTCATTTCTCAG CAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGCCGATGGGTCAGAEST: gi|151412005|gb|EV281816.1|EV281816
genomic: ACTCTCAATTCTCATTTCTCAGgtaattagca ... gctctattagCAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGA
EST: CTTTCTCCGTTCCTCACTTTACTATTTCACTCTCAATTCTCATTTCTCAG CAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGAEST: gi|57574181|gb|CX547156.1|CX547156
genomic: CTTTCTCCGTTCCTCACTTTACTATTTCACTCTCAATTCTCATTTCTCAGgtaattagca ... gctctattagCAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGA
EST: CTCATTTCTCAG CAAATTGAATCGAGCGAATTCACAAACCCTAGTNTTCGACGATGGGTCAGA
genomic: CTCATTTCTCAGgtaattagca ... gctctattagCAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGA
attcatttccgattaggcgattattttaaatcataatttgtggttgctctattagCAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGATCCAGTACTCCGAGAAGTACTTCGATGACACTTATGAATATAG
ttgctct CT-rich tract
attattttaaatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattagcatctctctctctctctctctctctctctctctctctctctctctctctctctgttacgcagaatattcatttccgattaggcgattattttaaatcataatttgtggttgctctattagCAAATTGAATCGAGCGAATTCACAAACCCTAGTTTTCGACGATGGGTCAGATCCAGTACTCCGAGAAGTACTTCGATGACACTTATGAATATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT