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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCGAAACTGGCTAAGGCGGCATGGCAATGGCCAACCAGAATGGTTTGGCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGgtacaataacatgattcatgattttcattttgaagccccttaatttgaacaacgaagaatgttaacaatacacactttctaactcttttttatcgattaa...

Basic information

species Glycine max
transcript GLYMA12G08740.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08740.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0061g00790.t01 (Vitis vinifera), 5'ss of exon 6
ATTTCGAAACTGGCTAAGGCGGCATGGCAATGGCCAACCAGAATGGTTTGGCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGgtacaataacatgattcatgattttcattttgaagccccttaatttgaacaacgaagaatgttaacaatacacactttctaactcttttttatcgattaa-----
||||||||| ||||| ||||||||||| ||  ||||||| || |||||||||| |   |   |   ||| ||||||||||| || ||||||||||| |||||     |  | |  | |   ||||         ||  ||   ||   || |  |  |||  | ||  |   || |||  ||  | |||   |  |  ||     
ATTTCGAAATTGGCTGAGGCGGCATGGGAACAGCCAACCTGACTGGTTTGGCATCTCAAATCAAGGACCTTTGCCATCAACAGTCTTATCAAAACGCCAGgtttggcagaaag--ttacccttttatgagcattgctactatcttcccactagaataaatagtgacttt---caattttcaaagcatttcagtgcaaaaattcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753121|gb|AI960408.1|AI960408
EST:     GCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAG                         ATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
genomic: GCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGgtacaataac ... gtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
EST: gi|20813605|gb|BQ298083.1|BQ298083
EST:     GTTTTATCAAAACGTCAG                         ATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
genomic: GTTTTATCAAAACGTCAGgtacaataac ... gtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
EST: gi|19452745|gb|BM954155.1|BM954155
EST:     CAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAG                         ATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
genomic: CAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGgtacaataac ... gtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
EST: gi|254333274|gb|GR850524.1|GR850524
EST:     GCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAG                         ATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
genomic: GCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGgtacaataac ... gtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA