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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaacttgaataatgttgctttgtagatggacatgtttcaagTGGATGAAAAAGGGTTTTATGTGAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCCTCACTGTGCAAGTCTCTCGAGTCTTTGACAGGCTTCAATGT

Basic information

species Glycine max
transcript GLYMA12G08640.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08640.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G28160.1 (Arabidopsis thaliana), 3'ss of exon 2
----------------------------------------------gtaacaacttgaataatgttgctttgt-agatggacatgtttcaagTGGATGAAAAAGGGTTTTATGTGAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCCTCACTGTGCAAGTCTCTCGAGTCTTTGACAGGCTTCAATGT
                                               | | |  ||| ||  | ||| | ||| |||||||  |  | |||||||| || |||||||||||||||| | | ||||| || ||||||||||| || ||| | || || | ||||||| | ||||||                 
gtaataacctaaaaaaaccaatcaatcttcttgaaacatcaaagtgtttaaagtttgtatg-ttttgttgtgttagATGGATGTTATACAAGTGGAGGAGAAAGGGTTTTATGTGAGATTGGTGTGTAACAAAGGAGAAGGTGTTGCTCCATCTCTTTACAAGTCTTTGGAGTCTC----------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacaacttgaataatgttgctttgtagatggacatgtttcaagTGGATGAAAAAGGGTTTTATGTGAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCCTCACTGTGCAAGTCTCTCGAGTCTTTGACAGGCTTCAATGT
                                     ttgaataat  TA-rich tract