1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttcctgcctcttgttcactcttaaccttttctgaatcctgcttaatattttataaattaatttaaacatgctctttgatttcagGCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCCAGTGAG
species | Glycine max |
transcript | GLYMA12G08600.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAG GCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCCEST: gi|51342409|gb|CO983482.1|CO983482
genomic: TTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAGgttcctgcct ... ttgatttcagGCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCC
EST: TTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAG GCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCCEST: gi|51338234|gb|CO982100.1|CO982100
genomic: TTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAGgttcctgcct ... ttgatttcagGCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCC
EST: TTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAG GCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCC
genomic: TTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAGgttcctgcct ... ttgatttcagGCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCC
tctgaatcctgcttaatattttataaattaatttaaacatgctctttgatttcagGCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCCAGTGAG
tgctcttt CT-rich tract
ttaatattttataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctgcctcttgttcactcttaaccttttctgaatcctgcttaatattttataaattaatttaaacatgctctttgatttcagGCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCCAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC