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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgctccagtgtctttgtttgttaaggctatcgtgttgttttttgttattttacaatgtcaaaaaaaccatcagtttttagcttgtctaaatactgaaacaagccatatttggatcaatgtactgcttatatgctatcagaggaaactgatgtgcctttttttaagtggttatattagttaatattatatgctttcagGAGACATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAGCTTATCTGTGTGGTCATGTAGAAAAAACAGTAGCCATTTGGGCCTTCAA

Basic information

species Glycine max
transcript GLYMA12G08570.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08570.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0061g00610.t01 (Vitis vinifera), 3'ss of exon 4
gttgctccagtgtctttgtttgttaaggc-tatcgtgttgttttttgttattttacaatgtcaaaaaa--accatcagtttttagcttgtctaaatactgaaacaagccatatttggatcaatgtactgcttatatgctatcagaggaaactgatgtgcctttttttaagtggttatattagttaatattatatgct----ttcagGAGACATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAGCTTATCTGTGTGGTCATGTAGAAAAAACAGTAGCCATTTGGGCCTTCAA
           || | | ||| | |     ||   | || |  || |  ||  |    |   |  |    |||  |     | |  || |   |   |       |   | | | |  | ||| || |  ||| |||  ||  ||  |    || |    | |  || | ||  | |  |||||| | || |||  |    |||||| ||   |||||||||||| ||| | || ||||||||||| || ||||| | || | ||||||| |||||||||||| || | || || ||| |||| ||
-----------gtttctatttttcaccttatactttcttctgcttggggatagtgtggtcatagtatgtcacctgcgaaactcattttatgacatatcacttgtcaattacactagctttaatttatt-tttaaatgtaatttgacaagttagaggcaa-tatacttgattgaat-ttctagttacttttctattgtcttcttcagGTGAAGCTTTTCTTGAAGGATTAATCGTAAATGGTTGGCTCTCTAAATTGGTTTTTATGTGTGGCCATGTAGAAAAATCAATTGCAATGTGGACCTTTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactgatgtgcctttttttaagtggttatattagttaatattatatgctttcagGAGACATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAGCTTATCTGTGTGGTCATGTAGAAAAAACAGTAGCCATTTGGGCCTTCAA
                                              tgctttc  CT-rich tract
             tttttttaagtggtta  TA-rich tract