Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagtttttttttcttcttcttttagacacgatacaacattttttgtgttggttatttatttgtttatttgttagtgcatgaaaatggactttaccttc...

Basic information

species Glycine max
transcript GLYMA12G08470.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08470.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g00460.t01 (Vitis vinifera), 5'ss of exon 3
ATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagtttttttttcttcttcttttagacacgatacaacattttttgtgttggttatttatttgtttatt-tgttagtgc-atgaaaatggactttaccttc-----
||||   | || |||||||| ||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||  | || ||   || ||     | | |  |  ||   |   || ||  |   ||||||  | ||| ||| ||  ||||  |||  |  |       
ATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTATTGGGAATGTCgtaagtattttgattttttt---ttgga---attcctagttaattgacgagtgtgatacagcagtttatgatattaatgctatccaaatt-actgaaaatatatgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6724946|gb|AW309345.1|AW309345
EST:     TTGATTTTTATTCTCGCGTCCTGGNGCATGTC                         TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCA
genomic: TTGATTTTTATTCTCGCGTCTTGG-GCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCA
EST: gi|12489864|gb|BG043385.1|BG043385
EST:     AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC                         TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
genomic: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT