1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcattttgttccactattatattatgagaaattcctgtttacatctatgctcttggaataactgcacatatatttaaattttttaaatctgtttgcagATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCAC
species | Glycine max |
transcript | GLYMA12G08430.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTG ATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTAEST: gi|7588613|gb|AW704405.1|AW704405
genomic: ATTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGgtatactctc ... ctgtttgcagATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTA
EST: ATTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTG ATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTAEST: gi|37996450|gb|CF808039.1|CF808039
genomic: ATTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGgtatactctc ... ctgtttgcagATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTA
EST: ATTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTG ATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTAEST: gi|13562830|gb|BG551050.1|BG551050
genomic: ATTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGgtatactctc ... ctgtttgcagATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTA
EST: ATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTG ATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTA
genomic: ATTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGgtatactctc ... ctgtttgcagATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTA
tctatgctcttggaataactgcacatatatttaaattttttaaatctgtttgcagATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCAC
gaataac putative branch site (score: 2)
tctgttt putative PPT
aataactgcacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcattttgttccactattatattatgagaaattcctgtttacatctatgctcttggaataactgcacatatatttaaattttttaaatctgtttgcagATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCAC
-tgcattt
- - - - - ttccact
- - - - - - - - - - - - - - - - - -cctgttt
- - - - - - - - - - - - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacat