Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatttattctttataatttcatcaattacttgttagtagtcgcctagttggtctaagagatacaatctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGTTACAATAATGTCTACCCTGGAAATGAAGATGAGGCAAGGGATCCACCTA

Basic information

species Glycine max
transcript GLYMA12G08370.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08370.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0061g00300.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtgatttattct--ttataatttcatcaattacttgttagtagtcgcctagttggtctaagagatacaatctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGTTACAATAATGTCTACCCTGGAAATGAAGATGAGGCAAGGGATCCACCTA
|||||  ||  ||  |  |    ||||   |||  |  ||| ||| |           ||   | | ||  |  ||  |||||||||||  ||||||| || || ||||||||||||||||| |||||||| || |||||||| || ||||||||  | ||||||||||||| ||| |||||| 
gtaagctatgaatcttggtggccattttgacaaccaaatgtaagtgg-----------gttctaaacatgtatactttctgcagGATGACACTACTGTTGTAGGTTTTGAAGTTCCAAAATCACCTGATTCAAGCTACAATAACGTGTACCCTGGGCACGAAGATGAGGCAAAGGACCCACCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208223787|gb|GE023940.1|GE023940
EST:     TCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: TCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193345447|gb|FK309218.1|FK309218
EST:     GGCCGGGCTCC-ATTCTTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GGCTGGGCTCCAATTC-TCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208327101|gb|GE122351.1|GE122351
EST:     CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|207817442|gb|GD787583.1|GD787583
EST:     TGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: TGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193538182|gb|FK494657.1|FK494657
EST:     CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GGTGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208086139|gb|GD881917.1|GD881917
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|207733048|gb|GD710900.1|GD710900
EST:     GCCGGGCTCCAATTCTCCAAGATGAGTCAATTCTTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GCTGGGCTCCAATTCTCCAAGATGAG-CAATTC-TCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|209726550|gb|BW662864.1|BW662864
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208197449|gb|GD997172.1|GD997172
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193717435|gb|FK650299.1|FK650299
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGATGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208335657|gb|GE138054.1|GE138054
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCGT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|298194823|gb|HO043295.1|HO043295
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193725624|gb|FK657314.1|FK657314
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|207698207|gb|GD679592.1|GD679592
EST:     GCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208307942|gb|GE108446.1|GE108446
EST:     CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208059412|gb|GD856952.1|GD856952
EST:     GGCTGGGCTCCTAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GGCTGGGCTCC-AATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208084435|gb|GD879681.1|GD879681
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|192334341|gb|FK024090.1|FK024090
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|213617351|gb|DB978977.1|DB978977
EST:     GGCTGGGCTCC-ATACAACCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GGCTGGGCTCCAATTC-TCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|209726551|gb|BW662865.1|BW662865
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208334539|gb|GE126646.1|GE126646
EST:     GGCTCCAATTCTACCAAGATGAGCAATTCTCACTCTGAAAATCGAT                         GATGAAGCTACTGGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCA
genomic: GGCTCCAATTCT-CCAAGATGAGCAATTCTCACTCTGAAAATC-ATgtaagtgatt ... ctacctgcagGATGAAGCTACT-GTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCA
EST: gi|207695900|gb|GD678753.1|GD678753
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193572841|gb|FK532448.1|FK532448
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|213606893|gb|DB961048.1|DB961048
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193346686|gb|FK312138.1|FK312138
EST:     CGGCTGGGCTCCAATCCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208194725|gb|GD993006.1|GD993006
EST:     TGGGCTCCAATTCTCCAAGATGTAGTCAATTTCTTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: TGGGCTCCAATTCTCCAAGATG-AG-CAA-TTC-TCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|7235178|gb|AW570507.1|AW570507
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193568343|gb|FK523910.1|FK523910
EST:     GCCGGGCTCCAATTTCTTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GCTGGGCTCCAA-TTC-TCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|192299134|gb|FG992880.1|FG992880
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193650568|gb|FK595075.1|FK595075
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193436991|gb|FK400352.1|FK400352
EST:     GCCGGGCTCCAATTTCTTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GCTGGGCTCCAA-TTC-TCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|192299135|gb|FG992881.1|FG992881
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTTTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193651209|gb|FK597642.1|FK597642
EST:     CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208173562|gb|GD966347.1|GD966347
EST:     CGGCCGGGCTCCAA-TCNCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208307210|gb|GE108750.1|GE108750
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208236910|gb|GE029780.1|GE029780
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193337581|gb|FK304599.1|FK304599
EST:     CGGCTGGGCTCCAATCCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|192327297|gb|FK018119.1|FK018119
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|298171710|gb|HO021302.1|HO021302
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCCGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208179102|gb|GD976129.1|GD976129
EST:     GGCCGGGCTCCAATTTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GGCTGGGCTCCAA-TTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193513206|gb|FK470992.1|FK470992
EST:     GCCGGGCTCCAATTTCTTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GCTGGGCTCCAA-TTC-TCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208284283|gb|GE086343.1|GE086343
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193706029|gb|FK648453.1|FK648453
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208302416|gb|GE097031.1|GE097031
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAACTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193724402|gb|FK657984.1|FK657984
EST:     CCGGGCTCCAATTCTCCAAGATGAGTCTAATTTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CTGGGCTCCAATTCTCCAAGATGAG-C-AA-TTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|207767792|gb|GD740764.1|GD740764
EST:     CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208305509|gb|GE106962.1|GE106962
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193642351|gb|FK592013.1|FK592013
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208217632|gb|GE009896.1|GE009896
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCTAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193540889|gb|FK493937.1|FK493937
EST:     CGGCCGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|208210935|gb|GE012654.1|GE012654
EST:     CGGCCGGGCTCCAATTCTCCAAGATGGGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193321321|gb|FK283637.1|FK283637
EST:     CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CGGCTGGGCTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|193559049|gb|FK511706.1|FK511706
EST:     CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: CTCCAATTCTCCAAGATGAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
EST: gi|207843294|gb|GD816895.1|GD816895
EST:     GAGCAATTCTCACTCTGAAAATCAT                         GATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT
genomic: GAGCAATTCTCACTCTGAAAATCATgtaagtgatt ... ctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattacttgttagtagtcgcctagttggtctaagagatacaatctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGTTACAATAATGTCTACCCTGGAAATGAAGATGAGGCAAGGGATCCACCTA
                                            tctacct  CT-rich tract
                                      atacaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgatttattctttataatttcatcaattacttgttagtagtcgcctagttggtctaagagatacaatctacctgcagGATGAAGCTACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGTTACAATAATGTCTACCCTGGAAATGAAGATGAGGCAAGGGATCCACCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG