Sequence
atgc intronic sequence ATGC exonic sequenceTCAGAAACCAACTCAAATGGCACCACATTTGTTCTTTTACCAAGTTCTTCAGTTTCTCAAGTTCTTTGGATGGCTGATCTGCGTTCAACAGCATTACCAAgtaagaatatagaactcttcagctcttgtcaatgtatattcttaattctattttattaataatggaatgctgtggatgaatgtggtcatcttcataaaat...
Basic information
species | Glycine max |
transcript | GLYMA12G08140.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08140.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G60700.1 (Arabidopsis thaliana), 5'ss of exon 2
TCAGAAACCAACTCAAATGGCACCACATTTGTTCTTTTACCAAGTTCTTCAGTTTCTCAAGTTCTTTGGATGGCTGATCTGCGTTCAACAGCATTACCAAgtaagaatatagaactcttcagctcttgtcaatgtatattctt-aattctattttattaataatgg--aatgctgtggatgaatgtggtcatcttcataaaat
| || || || || ||||||||| |||| |||||| |||| || |||| | || | ||||| |||||||||||||| | ||||||||||| ||||||||| || |||| || || | ||| || || | | || || |||| | | || |||| || | |
ACCGAGACTAATTCTAATGGCACCGCATTGGTTCTTCTACCGAGAGCTTCTATCTCCAAGGTTCTCTGGATGGCTGATCTAAGATCAACAGCATTGCCAAgtaagtatc---aactttttgccttt----aatatagcttttccagttttaatttaccgaaactgacaaatgtcttgatttcag-------------------
upper sequence: GLYMA12G08140.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g02690.t01 (Vitis vinifera), 5'ss of exon 2
TCAGAAACCAACTCAAATGGCACCACATTTGTTCTTTTACCAAGTTCTTCAGTTTCTCAAGTTCTTTGGATGGCTGATCTGCGTTCAACAGCATTACCAAgtaagaatatagaactcttcagctcttgtcaatgtatattcttaattctattttattaataatggaatgctgtggatgaatgtggtcatcttcataaaat
||||| || || |||||||| | ||||| |||||||||||||| |||| || | | |||||||||||||||||||| || || || ||||||||||||||||| || | | | | | | | | | ||||| |||| || | || | | | | ||| | || | ||
TCAGAGACTAATTCAAATGGTTCAACATTGGTTCTTTTACCAAGAGCTTCTGTACCAAAGGTTCTTTGGATGGCTGATCTTCGGTCCACGGCATTACCAAgtaagaaatc--aatttctgaagttacggaactctttcttcttccttctgattatcttatgaacaattatc--taacgaaca-acttatttccag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8401633|gb|BE057267.1|BE057267EST: AGTTTCTCAAGTTCTTTGGATGGCTGATCTGCGTTCAACAGCATTACCAA ATTGGAATCGGATGAGGATCTCTGTGAACATCATCACACAAAATAGAGTCA
genomic: AGTTTCTCAAGTTCTTTGGATGGCTGATCTGCGTTCAACAGCATTACCAAgtaagaatat ... tgtcttgcagATTGGAATCGGATGAGGATCTCTGTGAACATCATCACACAAAATAGAGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGAAACCAACTCAAATGGCACCACATTTGTTCTTTTACCAAGTTCTTCAGTTTCTCAAGTTCTTTGGATGGCTGATCTGCGTTCAACAGCATTACCAAgtaagaatatagaactcttcagctcttgtcaatgtatattcttaattctattttattaataatggaatgctgtggatgaatgtggtcatcttcataaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT