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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatttttgttttccttttttttttttaaccttgtgtcaattgaatcattttatattttcaccaaggtacctttaatctggctcctttatcccttcagatgcatgtgtttatcctagtcctatatttatttgggttgtgtttcctcttgtgatctcattgcagTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAGCAAAAACATTAAAAG

Basic information

species Glycine max
transcript GLYMA12G08110.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315560|gb|FK007388.1|FK007388
EST:     TACCATGATGCAGCTGGTGCTGCTAAGAAAACCGGAGAAGAACCCTTCAG                         TGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAG
genomic: TACCATGATGCAGCTGGTGCTGCTAAGAAAACCGGAGAAGAACCCTTCAGgtatcatttt ... ctcattgcagTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAG
EST: gi|192315559|gb|FK007387.1|FK007387
EST:     TACCATGATGCAGCTGGTGCTGCTAAGAAAACCGGAGAAGAACCCTTCAG                         TGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAG
genomic: TACCATGATGCAGCTGGTGCTGCTAAGAAAACCGGAGAAGAACCCTTCAGgtatcatttt ... ctcattgcagTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAG
EST: gi|213612088|gb|DB974536.1|DB974536
EST:     TACCATGATGCAGCTGGTGCTGCTAAGAAAACCGGAGAAGAACCCTTCAG                         TGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAG
genomic: TACCATGATGCAGCTGGTGCTGCTAAGAAAACCGGAGAAGAACCCTTCAGgtatcatttt ... ctcattgcagTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcctagtcctatatttatttgggttgtgtttcctcttgtgatctcattgcagTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAGCAAAAACATTAAAAG
                                            tctcatt  CT-rich tract
         tcctatatttattt  TA-rich tract