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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgtgttgcaaggctttactttttttttttataaatatatgcctgtaaattgattattaaaattgttactttgcagTTTTGTTGCAAAAATTTTGGGTTATGCATTGGAAGATTCACAATCAAAGTCTAGCCTTGTCAACTCACTTTCAGTGTGTATTTCTTTGTTGGATCCCAAA

Basic information

species Glycine max
transcript GLYMA12G08100.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08100.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 9
-------------------gttttgtgttgcaaggctttactttttttttttataaatatatgcctgtaaattgattattaaaattgt---tactttgcagTTTTGTTGCAAAAATTTTGGGTTATGCATTGGAAGATTCACAATCAAAGTCTAGCCTTGTCAACTCACTTTCAGTGTGTATTTCTTTGTTGGATCCCAAA
                   |  |  | ||   |   ||   ||| |||  ||||||| | ||   | || |||  |   |||   |||   |  | ||||||||||||| ||  || || | | |||||||||||||||| || ||||| ||| |||||||| ||||| | || || |||||||||||||||||||| |||
cacgggccactattttagcgcctctttttaataaaattacttttctttacttataaa-aaatatgtatatattcttctctaagtgtgtgtgttttctgcagTTTTGTTGGAAGGATATTTGATCATGCATTGGAAGATTCGCATTCAAAATCTGGCCTTGTCCACTCATTGTCTGTTTGTATTTCTTTGTTGGATCCGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttataaatatatgcctgtaaattgattattaaaattgttactttgcagTTTTGTTGCAAAAATTTTGGGTTATGCATTGGAAGATTCACAATCAAAGTCTAGCCTTGTCAACTCACTTTCAGTGTGTATTTCTTTGTTGGATCCCAAA
                          aattgat  putative branch site (score: 4)
                                            ttacttt  putative PPT
     ttttataaatatatgc  TA-rich tract