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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACTAAGATTCAACGTCTGCGCTCTTCAGCCACCATACCATAGATCCTTCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGGgtacgccactttctcttctttttaatttttttttgttcttctttttcttcaacccctctattcgcaaaggaagcaacggaatcgattctgttcagttttc...

Basic information

species Glycine max
transcript GLYMA12G08090.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208242027|gb|GE042817.1|GE042817
EST:     TCATTCTCTGCAACGATCAAACCCAAAAAACACCGCACCTCTTCTTCTGG                         ATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
genomic: TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
EST: gi|207823640|gb|GD796205.1|GD796205
EST:     CACCTCTTCTTCTGG                         A-TTGGTG-AGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
genomic: CACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
EST: gi|151404656|gb|EV274470.1|EV274470
EST:     TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGG                         ATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
genomic: TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
EST: gi|21256578|gb|BQ453466.1|BQ453466
EST:     TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGG                         ATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
genomic: TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
EST: gi|208247863|gb|GE045335.1|GE045335
EST:     AAAAACACCGCACCTCTTCTTCTGG                         ATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
genomic: AAAAACACTGCACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
EST: gi|192325870|gb|FK016547.1|FK016547
EST:     TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGG                         ATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGGATTGAAGTTTGAGG
genomic: TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
EST: gi|193611801|gb|FK565402.1|FK565402
EST:     TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGG                         ATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGA
genomic: TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGA
EST: gi|7686466|gb|AW757114.1|AW757114
EST:     TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGG                         ATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
genomic: TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
EST: gi|208279703|gb|GE080056.1|GE080056
EST:     CACCTCTTCTTCTGG                         ATTTGGTTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAG
genomic: CACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGG-TGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAG
EST: gi|19936362|gb|BQ080833.1|BQ080833
EST:     TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGG                         ATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG
genomic: TCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGGgtacgccact ... gtgcgatcagATTTGGTGAAGAAGAGAGTGTGATTTGATGATTATGAATTGAAGTTTGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAACTAAGATTCAACGTCTGCGCTCTTCAGCCACCATACCATAGATCCTTCATTCTCTGCAACGATCAAACCCAAAAAACACTGCACCTCTTCTTCTGGgtacgccactttctcttctttttaatttttttttgttcttctttttcttcaacccctctattcgcaaaggaagcaacggaatcgattctgttcagttttc

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