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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGTGGCCTGTCTCTGCGTGTTTCTCAGTTTGTTTTCGCTGCTGCTGCACTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactttttatgaacatagctttttccttattattccttttaattttgttttgtttgtaattgtgattgaaagaattaagaaatatgtgtcgagtg...

Basic information

species Glycine max
transcript GLYMA12G08090.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08090.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g02790.t01 (Vitis vinifera), 5'ss of exon 1
CCGGTGGCCTGTCTCTGCGTGTTTCTCAGTTTGTTTTCGCTGCTGCTGCACTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactttttatgaacatagctttttccttattattccttttaattttgttttgtttgtaattgtgattgaaaga-attaagaaatatgtgtcgagtg-
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CCGGAGGGCTCTCGCTTCGTTGCTGTCAGTTTCTGTTTGCAGCAATTGCTCTCTGTGTCATGGTCACCACCAGTGATTTCTCTTCTGTCACTGCATTCTGgtaacaccctttcaccccccaggaattt--ctaagtttacagtagaaatttggagattacgtgacctcgttggtataatattaagagatggaatttggacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207828708|gb|GD798425.1|GD798425
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTG
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTG
EST: gi|58018228|gb|CX704970.1|CX704970
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|17021342|gb|BM092376.1|BM092376
EST:     ACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: ACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|193345797|gb|FK311318.1|FK311318
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|193527920|gb|FK483422.1|FK483422
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|193362435|gb|FK325301.1|FK325301
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|151404656|gb|EV274470.1|EV274470
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCTTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|208086022|gb|GD885062.1|GD885062
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC