Sequence
atgc intronic sequence ATGC exonic sequence...ggctggttgctgtgtgctattatccgtcattaacaactatggtctaaagatatatagaaatgatgaacactgaattaacaatattatttttacttgacagTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCCGAGAACAATGACGAACTAGAACAGATCACTATAGCACGGGCCTTACTGAACTACAGACTGAAGGA
Basic information
species | Glycine max |
transcript | GLYMA12G08070.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298197221|gb|HO041964.1|HO041964EST: ACAAGCGGAGAAAAATGCAGCTATGGCCGCATGGTCTTCTCTAAAGCAAT TGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCCGAGAACAATGACGAAC
genomic: ACAAGCGGAGAAAAATGCAGCTATGGCCGCATGGTCTTCTCTAAAGCAATgtaagtggct ... tacttgacagTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCCGAGAACAATGACGAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagatatatagaaatgatgaacactgaattaacaatattatttttacttgacagTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCCGAGAACAATGACGAACTAGAACAGATCACTATAGCACGGGCCTTACTGAACTACAGACTGAAGGA
aattaac putative branch site (score: 2)
tttttactt putative PPT
aacactgaattaacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggctggttgctgtgtgctattatccgtcattaacaactatggtctaaagatatatagaaatgatgaacactgaattaacaatattatttttacttgacagTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCCGAGAACAATGACGAACTAGAACAGATCACTATAGCACGGGCCTTACTGAACTACAGACTGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- -tggttgc
- - - - - tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa