Sequence
atgc intronic sequence ATGC exonic sequenceGTTGTGGTTTTGAGGGTGTCATTGCATTGCAAGGCCTGCGAAGGAAAAGTTAGAAAACATATTTCAAAAATGGAAGgtgagtttagttaatcaatacatagttttggagtttaaaaatgagagcatcaatttaattagcaaaatagttgcagtaataataattctgatatccttat...
Basic information
species | Glycine max |
transcript | GLYMA12G08030.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G28660.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTGTGGTTTTGAGGGTGTCATTGCATTGCAAGGCCTGCGAAGGAAAAGTTAGAAAACATATTTCAAAAATGGAAGgtg---agtttagttaatcaatacatagttttggagtttaaaaatgagagcatcaatttaa--ttagcaaaatagttgcagtaataataattctgatatccttat
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GTTGTTGTTTTGAGGGTATCAATCCATTGCAAGGGATGTGAAGGAAAGGTTAGAAAGCATATCTCCAAAATGGAAGgtactaagaatatcttctaaattcatt-ctacagaattaagtatcttattcatgtacctaaccttaacatttaatatacaattcaaatgaaacattcagcg----
upper sequence: GLYMA12G08030.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g04030.t01 (Vitis vinifera), 5'ss of exon 2
GTTGTGGTTTTGAGGGTGTCATTGCATTGCAAGGCCTGCGAAGGAAAAGTTAGAAAACATATTTCAAAAATGGAAGgtgagtttagttaatcaatacata-gttttggagtttaaaaatg-agagcatcaatttaattagcaaaatagttgcagtaataataattctgatatccttat
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GTGGTGGTTTTGTGGGTATCATTGCATTGCAAGGGGTGCGAAGGAAAGCTGAGAAAACACATATCCAAAATGGAAGgtaagtttagtacacagaaaagtatgctttacaactcaatcttccaaaatttcttgtggaaatccgtgagaattactcttcttttcatttaaacatgaat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192321962|gb|FK012514.1|FK012514EST: TTGCAAGGCCTGCGAAGGAAAAGTTAGAAAACATATTTCAAAA-TGGAAG GAGTGACATCATTCAGCATAGACATGGAGACAAAGAAAGTGATCATCGTCT
genomic: TTGCAAGGCCTGCGAAGGAAAAGTTAGAAAACATATTTCAAAAATGGAAGgtgagtttag ... atatatgtagGAGTGACATCATTCAGCATAGACATGGAGACAAAGAAAGTGATCATCGTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGTGGTTTTGAGGGTGTCATTGCATTGCAAGGCCTGCGAAGGAAAAGTTAGAAAACATATTTCAAAAATGGAAGgtgagtttagttaatcaatacatagttttggagtttaaaaatgagagcatcaatttaattagcaaaatagttgcagtaataataattctgatatccttat
- - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG