Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttcttgttttctgaaatttgtcatttaacttactttggtagttgctgtatacatacgaagcagcatatgaatagcctgactcaagaggaaatat...

Basic information

species Glycine max
transcript GLYMA10G44480.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44480.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0062g01220.t01 (Vitis vinifera), 5'ss of exon 10
TTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttcttgttttctgaaatttgtcatttaacttactttggtagttg---ctgtatacatacgaagcagcatatgaatagcctgactcaagaggaaatat
|| ||||||||||||||||| || ||| |||| |||||||| || ||||||||||| ||| |||| || |||||||||||||| ||  ||||||  |  ||      ||| | || |  ||    | |  |||  | |     || |  |||     | |    | |    |   ||  || |          
TTTAACTTGAAGCGTGGTGGTCAACGAGTAGCAACAATGCTCATTTATTTAAGTGATAATGTTGAGGGGGGAGAAACATATTTCCCTATGgtaa-ttagttagaacttgatacttattgttcttttaatgttgtaaatcaaaactttcaacaacttgaactat-tttctgcaatttggttctatctaggggc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493327|gb|EH221494.1|EH221494
EST:     TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTG                         GCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
genomic: TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttct ... tataattcagGCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
EST: gi|192303479|gb|FG994485.1|FG994485
EST:     TTATGTATTTAAGTGACAATATTGAACGAG-AGAAACATATTTTCCATTG                         GCTGGTTCAG-TGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
genomic: TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttct ... tataattcagGCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
EST: gi|192297189|gb|FG988285.1|FG988285
EST:     TTATGTATTTAAGTGACAATATTGAAAGAGGAGAAACATATTTTCCATTG                         GCTGGTTCAG-TGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
genomic: TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttct ... tataattcagGCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
EST: gi|151395369|gb|EV265240.1|EV265240
EST:     TTATGTATTTAAGTGACAATATTGAAAGAGGAGAAACATATTTTCCATTG                         GCTGGTTCAG-TGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
genomic: TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttct ... tataattcagGCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
EST: gi|209709077|gb|BW658793.1|BW658793
EST:     TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTG                         GCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
genomic: TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttct ... tataattcagGCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
EST: gi|5605677|gb|AI899838.1|AI899838
EST:     TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTG                         GCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
genomic: TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttct ... tataattcagGCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
EST: gi|209709078|gb|BW658794.1|BW658794
EST:     TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTG                         GCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
genomic: TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttct ... tataattcagGCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
EST: gi|192313358|gb|FK005130.1|FK005130
EST:     TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTG                         GCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT
genomic: TTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttct ... tataattcagGCTGGTTCAGGTGAATGCAGCTGTGGTGGGAAACTTGTCAAAGGGCTATCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTAAGTGACAATATTGAAGGAGGAGAAACATATTTTCCATTGgtaagcttcttgttttctgaaatttgtcatttaacttactttggtagttgctgtatacatacgaagcagcatatgaatagcctgactcaagaggaaatat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA