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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaataaatagtttacttttactttctttttccttttctattttagttatattttacccaccctcacaaacattctatcatccttttcaatcatgattaaacttttctttttccttataacatttatagttaaatctttcagagctggactgaaaatatataatatttgatccatgtttttctgtattttag

Basic information

species Glycine max
transcript GLYMA10G44190.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g05660.1 (Oryza sativa), 5'ss of exon 7
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttaca-------ctaat-aaatagtttacttttactttctttttccttttctattttagttatattttacccaccctcacaaacattctatcatccttttcaatcatgattaaact-tttctttttccttataacatttatagttaaatctttcagagctggactgaaaatatataatatttgatccatgtttttctgtattttag
                                                    || |||||||||||||||||||| |||||||| ||||| || |||||||| |||       || || ||| |    |||  |||| | | || |   | || ||  |   |  |||     | |          || |||    | |||||| ||| ||    || | |    || | | | | ||  || || |  || ||||     |  |    ||| |   |||  |||    | |||||  |||      
----------------------------------------------------AACAGATATCAACGCCAAAGACTATATACTCGGATTGCTTTAGGAAAGgtaacatatttttctgatcaaaaaacaaactgatactctatgttcc---tgctgttccaaagaactttctggtatctatttgctt-ttttatgg--catttcaagcatcatgtggctatatgcacttacctgtgagatc-at-gtcatttccttcattttagtccaagtaattttgcataactgaattttcttttttggtag-----

upper sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 6
lower sequence: AT1G33230.1 (Arabidopsis thaliana), 5'ss of exon 7
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaataaatagtttacttttactttctttttccttttctattttagttatattttacccaccctcacaa-acattctatcatccttttcaatcatgattaaacttttctttttccttataacatttatagttaaatctttcagagctggactgaaaatatataatatttgatccatgtttttctgtattttag
 |  ||||| || || ||||||||||||||||| || || |||||| |||||||||||||||| ||||||||| | || ||||| |||||| | ||||||||  ||       |   ||||| |||   |||| | |||   || || |     |   |  |    |  | | ||    |    |  || ||||||                                                                                                       
GCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATGCTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGgtgccat------actatttacattt---ttctctctccaaatc-atatccaccactatgaaattgctgtaaaaatgtgtgtggtggtcattttcag------------------------------------------------------------------------------------------------------

upper sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 6
lower sequence: AT4G10430.1 (Arabidopsis thaliana), 5'ss of exon 7
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaataaatagtttacttttactttctttttccttttctattttagttatattttacccaccctcacaaacattctatcatccttttcaatcatgattaaacttttctttttccttataacatttatagttaaatctttcagagctggactgaaaatatataatatttgatccatgtttttctgtattttag
 || ||||| ||||| ||||||||||||||||| || || |||||||| ||||| |||||||||||||||||| | || ||||| |||||| | ||||||||  |  |  ||  |  | | |  ||  ||||| ||   ||    ||| || || | ||||    |   |      | || |    |   ||| |                                                                                                       
CCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGgt-gccttcttatgtcatgtgcactt--tttctcttcagttcaaaattctatttgt-ttttgtaaagttt-----gcgttgtggtttatgttttag------------------------------------------------------------------------------------------------------

upper sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 7
ACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacact----aataaatagtttacttttactttctttttccttttctattttagttatattttacccaccctcacaaacattctatcatccttttcaatcatgattaaacttttctttttccttataacatttatagttaaatctttcagagctggactgaaaatatataatatttgatccatgtttttctgtattttag
||||||||| ||||| ||||||||||||||||||||||| |||||  | |||||||||||||||||||| |||||||||||||| |||||||||||||||||  || |    ||| | ||   | | ||||    ||| | | |    | |||| | |    |||   ||   | |    | || | |     ||||   |                                                                                                     
ACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCATTGGGAAAGgtgtcatttcacaattattatcatgcatttaaaagcttatgcatgccttcttttggcttc--tttgggcatggttatt--ctttgtcttgattttttgggtggg--------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697541|gb|BW670042.1|BW670042
EST:     AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaa ... tgtattttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|58021387|gb|CX708128.1|CX708128
EST:     AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTCGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaa ... tgtattttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|58024474|gb|CX711215.1|CX711215
EST:     AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTCGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaa ... tgtattttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|298189043|gb|HO035680.1|HO035680
EST:     AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAG                         GCTAAGTGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaa ... tgtattttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|214006019|gb|DB986566.1|DB986566
EST:     ACAAAAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: A-AATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaa ... tgtattttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|23727946|gb|BU762014.1|BU762014
EST:     AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaa ... tgtattttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
EST: gi|254346987|gb|GR857191.1|GR857191
EST:     AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAG                         GCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA
genomic: AAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCATTGGGAAAGgttacactaa ... tgtattttagGCTAAGAGGATGGATGTTGTGTGGGGGGAAACAGCTGGTGTGGATGGCCAA