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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag

Basic information

species Glycine max
transcript GLYMA10G44110.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g61860.1 (Oryza sativa), 5'ss of exon 9
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag
  ||||| || ||||| || || || || || ||||||||||||||||||||||| || || || ||  |||||||||| || |||||||||||| | || |||| || | | |||||   || |||   | |      ||   |  || |     ||  ||  | |||  |||   |    | ||   | | | |                            
TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgt-aagtcttat-ttttctttatttgaaagagtaatttcggaaaggttt-tatggtcgaagtcgtagaa-aaccatgggtattttggcttgtggtatacatccc---------------------------

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g38950.2 (Oryza sativa), 5'ss of exon 9
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttg-tacgctattgtttgagcttccttctgatccattgtaattatttggacttcag
| ||||| || ||||| || ||  | || || |||||||||||||||||||||||||| ||||||||    ||  ||||||||||||| |||||| || ||||      || || | | ||  | |    |    ||  |  |  ||    |   | | |  |   | || | || || |||| | ||| |   |    |                         
CAAATCACCTGGATTACCTTGGTCTTCAAGTTGCATGGGTTACTGGACCATGGTTCCTATCCATTTTCACCAATGTGCTTCCTTGGGAGAGTGgttagatttt------tacctttgttgttctttcatgtttgtttcttgtaggaaaccccatttttaatttataccttagctaagccattggtggagata--taacaac------------------------

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 9
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag
  |||||||| ||||| || || || || || |||||||| ||||| ||||||||||| || |||||| ||||||||||||| |||||||||||| ||   ||||  | |||   || |    | ||   |   |||  ||   || | ||    | ||        |||| |  | ||||        || | | |                           
TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgag-ccttattctgtattatttgaaacatctacattttcctt--tttgaaatgatgtttctctgcttgccttattt-tgtgttatttgaaacatttaccttt---------------------------

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G051050_T01 (Zea mays), 5'ss of exon 9
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagt-cttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag
| ||||| || ||||| || ||| | || || |||||||||||||| ||||||||| | ||||| ||   |||  |||||||||||||||||||| ||  ||||| || |  |   ||| |    |  || ||| |||    || ||  ||  | ||    |  |   |  |  | || || |  | | || |                                
CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCATGGTTCTTATCCATCTTCACGAATGTGCTTCCTTGGGAAAGTGgttagactttatttttttaca--ttatttccattaccgagtacttgtagcagaacattctctataaatatagtttagcta-atgcgatggggttacctgcacc-----------------------------

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag---------------------------------
   ||||||| |||||||| |||||||| ||||| |||||||| || |||||||| || ||||| ||  |||| |||||||| |||||||||||||||||||||     |     |  ||  || | |  |    |    |     |  |   ||  |    ||   || |||    ||   ||||| | || ||||  |  |   |    | |  ||   ||                                  
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatagaattgagtaactagtaaattatgctggcaatctgt----taaaatttgatcatctttctctttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 9
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag
   |||||||||||||||| |||||||||||||| || ||||| || |||||||| ||  |||| ||  | || |||||||| ||||||||||||||||||||  |        | || | | | ||  ||   |||       ||| |||   || |    | |   ||| |        || | |  |  |||||     ||   |                
TTCATCATCTAGATTATCTTGGAGTGCAGGTGGCTTGCGTTACAGGGCCATGGTTTCTTACCATCTTCATTAATATGCTTCCATGGGAAAGTGgtcaggtttttaga-------aattggaattttaaactttacttttagaggaaaattgtttatatactcttacgttttctgaatgtcagtctcaaatatcttctttggtataacag---------------

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggtt---ttatgttctatctatttagtag-tgtagcctagt-cttacttcaca-----aagttgccaatgtgaaatgagcatttg--tacgctattg-tttgagcttccttctgatcc--attgtaattatttggacttcag----------------------------------------
  ||||| || |||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||||||| |||||||||||||||  |   | |||   ||| ||   | ||| |||    | |  | ||| |  ||     ||  |    || |    |     | ||   |    | |  | | ||| | ||  |  ||   |||| | | ||   | |||                                           
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S31_313V6.1 (Physcomitrella patens), 5'ss of exon 9
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcagg---ttttatgttct-atctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag
| | |||||| ||    || ||||||||||| |||||||||| ||| || |||||||| ||||| ||||||||| |  | || ||||| | ||||  |    ||||||| | | || | ||| ||| | ||    ||  ||| ||     |   | |||| |  | |   |     |||      |    | ||| |||                             
CAACTCATCTGGAGAGCCTTGGAGTGCAGGTAGCATGGGTTAGTGGCCCTTGGTTCCTTTCCATCTTTGTGAACGTCGTACCATGGGAGACTGgtatgtcatttttatgatatcatattttttgtaatttaa---agctttagtttttgga---ggcaatattgactcgtcgacaatacagaggaggagaatcttgctt-----------------------------

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ22778 (Selaginella moellendorffii), 5'ss of exon 8
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag
     ||| | || |  || || || ||  |  | ||| | | |||||| |||||||| || || ||||||||| | || ||||||||||||||||||    ||        | |||||   |  |  |||  |    ||    ||| ||  |  |||| |                                                               
TTTCGCATTTTGAATCCCTTGGTGTTCAAATATCGTGGATGAGTGGACCCTGGTTCCTATCTATATTTGTGAACGTCCTACCTTGGGAAAGTGgtcag----ta--------caatttaaatgcatttcctctttccgctgatgaaaattaact-tgtgcag--------------------------------------------------------------

upper sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ30863 (Selaginella moellendorffii), 5'ss of exon 8
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag
     ||| | || |  || || || ||  |  | ||| | | |||||| |||||||| || || ||||||||| | || ||||||||||||||||||    ||        | |||||   |  |  ||   |    ||    ||| ||  |  |||| |                                                               
TTTCGCATTTTGAATCCCTTGGTGTTCAAATATCGTGGATGAGTGGACCCTGGTTCCTATCTATATTTGTGAACGTCCTACCTTGGGAAAGTGgtcag----ta--------caatttaaatgcatttccactttccgctgatgaaaattaact-tgtgcag--------------------------------------------------------------