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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTCTGAAATTTGAACATAGAAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggtaccttcttacgtttatattaatatatatttttttttaattatcatgatttgtgatcaagtatgtatagctaaagtttgacttttatgttatgtcaaaag

Basic information

species Glycine max
transcript GLYMA10G44050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 3
GTGGCTCTGAAATTTGAACATAGAAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggtaccttcttacgtttatattaatatatatttttttttaattatcatgatttgtgatcaagta-------tgt---atagctaaagtttgacttttatg--ttatgtcaaaag-------------------------
|| ||| ||||||| || || |||||||| || ||||| |||||||||||||| || |||||||| || |||||||| ||      || | |||  |  |  ||||  || |||  |||  | ||   ||   |  ||  |       |||   ||  |  ||     || ||||    || | |  |||                          
GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag

upper sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGGCTCTGAAATTTGAACATAGAAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggtaccttcttacgtttatattaatatatatttttttttaat--tatcatgatttgtgatcaagtatg-----tatagctaaagtttgacttttatgttat---gtcaaaag---------------------------------------------------
|| ||| | || ||||||||| | | ||| ||||| || || ||||| |||||||||||||||||||| |||||||  ||  |        |   |  |  | |||  |||  |  |||   ||    |||  || || | |         || |   | |||  | |||| || | |   ||  ||                                                     
GTAGCTTTAAAGTTTGAACATCGGAGCAGCAAGGGTTGCAATTATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcgtctcgaaccgactcagtcctt-tctatcctttgctacaatgtcattggaattgctgttccaattctagcctcatcgtggaggtt--atttttgtgctgtcgggttcaatctaattaggtcataaatgttaatggtgatgataatccttggttgttgcgcag

upper sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S208_44V6.1 (Physcomitrella patens), 5'ss of exon 3
----------GTGGCTCTGA--AATTTGAACATAGAAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggtaccttcttacgtttatattaatat-atatttttttttaattatcatgatttgtgat-caagtatgtatagctaaagtttgacttttatgtt---atgtcaaaag----------------------------------------------
          |  | ||  |  | || || ||| | |   |||| ||||||||  |||| |||||||||||||||||||| |||||||      | |||   | |  ||  | | | || |   | || |  | | || | | |||   ||| ||  | |    |    ||   ||     ||   |||| |  ||                                              
GTTGCGGGTTGAAGTTCGAACAAGTTCGAGCATCGGAGTGGTAACGGCTGTAATCATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtg-----cgtctcgagctcgtaccattgtgatttcactcttgagatgtgattactagtgtcgcaattacctttctgcatttcttattttcatcattcaaatgtgattagggcttgtctcctaaacctccatggttgacgcggattctttctccag

upper sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ31718 (Selaginella moellendorffii), 5'ss of exon 3
GTGGCTCTGAAATTTGAACATAGAAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggtacc-ttcttacg----tttatattaatatatatttttttttaattatcatgatttgtgatcaagtatgtatagctaaagtttgacttttatgttatgtcaaaag
|| ||| |||| |||||||| |||| |||||| || || |||||||| ||||| || ||||||||||| |||| ||| ||| | || ||  |    ||| | |   | | | || ||| | |  |||| || ||| || |                                            
GTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACACgtatgtagcattgttttggctttttttttctttgtgttttgtttctaagctatcgtgttttatgtttgcag---------------------------------------