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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCACTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtatgtttattatttctcacatacttgcatttcttccatttatattttataatttgttttaagttcttatttttatgcaaatgagcaaaatgttatattt...

Basic information

species Glycine max
transcript GLYMA10G26510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G26510.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g43030.1 (Oryza sativa), 5'ss of exon 12
-AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCACTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtatgtttattatttctcacatacttgcatttcttccatttatattttataatttgttttaagttcttatttttatgcaaatgagcaaaatgttatattt--
 |  |   ||  || |||||||| ||||||||||| |||||||| ||||| ||||| |||||| | |||||||||||||||||||| | || | | || ||||| |     | |   ||  |||  ||   || ||   |  ||||   |  |     | | | |  | |  |||||  | |   |    | | |  |     
AAAACATACC-TAAGTGGCATGTCTATGTGACTGGACATAGTTTAGGTGGAGCACTAGCAACCCTTCTTGCTCTTGAACTTTCATCAAGTCTAATGGCCAAgtaagaa-gctctgaatctgatatctgatcttatttgctggatatgagaggaaagactctca-tattgaaatttattaagacaggggtgaggctcgaaccca

upper sequence: GLYMA10G26510.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G13550.1 (Arabidopsis thaliana), 5'ss of exon 12
AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCACTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtatgtttattatttctcacatacttgcatttcttccatttatattttataatttgttttaagttc----ttatttttatgcaaatgagcaaaatgttatattt
||       | ||||||||||||||||||||||||||||| |||||||| ||| | || ||  |  | ||||| |||||||| || |  |||||||| ||||| ||   ||        | | ||   |  | |  |  | |        |  ||  |     ||     | |||| | |||   | ||               
AGCGTGAAGATAAATGGCATGTTTATGTGACTGGTCATAGCTTGGGTGGCGCATTAGCTACACTCTTGGCTCTCGAACTTTCGTCCAGCCAATTAGCTAAgtaagtactttgagaactcccttctcctacatatcaccctgacgacaagcagcttaatgggcatttaacatgatttgtgtgcttgttag---------------

upper sequence: GLYMA10G26510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 6
AGTCGCTCCACAAATGGCATGTTTATGTGACTGGTCATAGTTTGGGTGGTGCACTGGCAACCTTGCTTGCTCTTGAACTTTCATCTAATCAATTAGCAAAgtatgtttattatttctcacatacttgcatttcttccatttatattttataatttgttttaagttcttatttttatgcaaatgagcaaaatgttatattt-
||  ||  | |||||||||||| |||||||||||||||||||| ||||||||| | || ||| | ||||| ||||| |||||||| | |||||| |||||||  |||  || | | |    |        ||      |||   |  |  | || ||||   ||    |  |||  |         ||| | ||  |||  
AGATGCAGCTCAAATGGCATGTGTATGTGACTGGTCATAGTTTAGGTGGTGCATTAGCCACCCTTCTTGCGCTTGAGCTTTCATCAAGTCAATTGGCAAAgtgagttctttctctttttagtttacatgcttaagtgttttgcttcctcca-ttcgtttatggtggccaacttttggttttctcctaaattctttcattcc