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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTCATATTGCTGGAACTAAGGGGAAGGGATCAACAGCTGCTTTTGTATCTAATATTCTGAGGAATGAAGGCTATTCTGTTGGTTGTTACACCAGgtgaagtttctctatcatttaaatatgttttatttttgtataattgcatctgcttgtgattcgtcttcaactatatattctttacagttttgcacatcattgacagcaggctttatttttctcaagcag

Basic information

species Glycine max
transcript GLYMA10G07590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07590.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G41480.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGTTCATATTGCTGGAACTAAGGGGAAGGGATCAACAGCTGCTTTTGTATCTAATATTCTGAGGAATGAAGGCTATTCTGTTGGTTGTTACACCAGgtgaagt-ttctctatcatttaaatatgttttatttttgtataattgcatctgcttgtgattcgtcttcaactatatattctttacagttttgcacatcattgacagcaggctttatttttctcaagcag
| ||||||| |||||||||||||||| || ||||||||  |||||||| | ||||||||  |  |   || ||| |||||||||||||||||  | |||| |||| ||  || |   |||||   |||||||   |||||  |||  | ||  | |  ||| |  | |  || ||    |||      |||  | |||||| |||                       
GTTGTTCATGTTGCTGGAACTAAGGGAAAAGGATCAACTTCTGCTTTTCTCTCTAATATCTTACGAGCTGGAGGATATTCTGTTGGTTGTTATTCTAGgtaaagtattgactttggattaaa---gttttat---tgtatt-ttgagtttgaatct--ttcatggttacttacatgagtttt------ttgttcttcattg-cag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591517|gb|DB973866.1|DB973866
EST:     GTATCTNATATTCTGAGGAATGAAGGCTATTCTGTTGGTTGTTACACCAG                         TCCACATATCCTGACCATCCGGGAGCGCATTTTACTGGGAAAATCCGGCCA
genomic: GTATCTAATATTCTGAGGAATGAAGGCTATTCTGTTGGTTGTTACACCAGgtgaagtttc ... tctcaagcagTCCACATATCCTGACCATCCGGGAGCGCATTTTACTGGGAAAATCCGGCCA
EST: gi|298169489|gb|HO020849.1|HO020849
EST:     GTATCTAATATTCTGAGGAATGAAGGCTATTCTGTTGGTTGTTACACCAG                         TCCACATATCCTGACCATCCGGGAGCGCATTTTACTGGGAAAATCCGGCCA
genomic: GTATCTAATATTCTGAGGAATGAAGGCTATTCTGTTGGTTGTTACACCAGgtgaagtttc ... tctcaagcagTCCACATATCCTGACCATCCGGGAGCGCATTTTACTGGGAAAATCCGGCCA