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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattcatagttgtcttcctttcaagtcataatgtgatggaatatacgaatcgttacaacatgataaataattgaagtttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT

Basic information

species Glycine max
transcript GLYMA10G01820.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g23740.2 (Oryza sativa), 3'ss of exon 7
tattcatagttgtcttcctttcaa-gtcataatgtgatggaatatacga-atcgttacaacatgataaataattgaagttt--gctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
      |  | | | | ||| ||      |||  | |||   | | | | ||  | |   ||||||  |  |   ||||||   || |  | ||   | |  || || |  ||   ||| | |||||| |||||||||||||||||||| ||||||||||||||||| ||||  || || || || ||||||||||||||    
---atgttatgggcatgcttccagcactttaaactcatgtcttgttctatattttgatttcatgatgcactacataagttttgacttgctttatgacttt-tagATATGGAGTTTCTGGCTATCCTACATTGAAGTTCTTCCCAAAGGGAAACAAAGCTGGTGAAGATTACGATGGCGGCAGGGAGTTGGATGACTTTGTCAAG

upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 3'ss of exon 7
-----tattcatagttgtcttcctttcaagtcataatgtgatgga--atatacgaatcgttacaacatgataaataattgaagtttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
         ||||    |     |||  |       |||| | |   || || |  |   | |  ||| | | |   || ||   |||    ||   | ||   |||||| |  ||   ||| || || || ||||| |||||||||||||| ||||||||||||||||| || |  || ||  | || ||||||||||| ||    
tagatctaacatacacatacctgtttttataggatgtgtggttggtcatgtatgtttttcttccccataagagaatttttaatcatgc----atgccactt---cagGTATGGAGTTTCTGGTTTCCCCACATTGAAATTCTTCCCAAAGGGAAACAAAGCTGGTGAAGATTATGATGGCGGTCGCGAGTTGGATGACTTCGTCAAG

upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G128171_T04 (Zea mays), 3'ss of exon 6
-----------------------------------------------------------------------------------tattcatagttgtcttcct-ttcaagtca-taatgtga---tggaatatacgaatcgttacaacatgataaataatt-----gaagtttgctgga---ataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
                                                                                   |  || |  ||  |||    | | ||||| || | |     || || | |  |  | |||  |  |   |  |  |      | | | | ||| |   || | | |    |||||| |  || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |  || |  || ||||||| |||||||||    
gtatgttctgtgtcttacattcacatatgctttatctgcatctgtttccctatttgtgttacctagcagctagcactggagcatgatcttgtttccctttgaatactagtcactagtatttgtttgcaacaaataacaccttattatttctgacttgttctatacgcaatatactgtacttatcacactacatcagGTATGGAGTTAGTGGATTTCCTACCTTGAAGTTTTTCCCAAAGGGAAACAAAGCTGGTGAAGATTATGATGGCGATAGGGACTTGGTTGACTTTGTCAAG

upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: AC217311.3_FGT007 (Zea mays), 3'ss of exon 1
tattcatagttgtcttcctttcaagtcataatgtgatggaatatacgaatcgttacaacatgataaataattgaagtttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
                                           || | ||  || ||   | | |        |  |||  |   |  |||  | ||||| || |  ||   ||| || ||||| |||||||||||||| ||||| |||||||| |||||||| || |  |||||  | |||||||||||||||||    
------------------------------------------gtatgcattcttccatgttcacagc------atctttaataataatatacctctgcagATATGGTGTTTCTGGTTTCCCTACATTGAAGTTCTTCCCTAAGGGAAACAAAGCCGGTGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAG

upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G159369_T01 (Zea mays), 3'ss of exon 7
-tattcatagttgtcttcctttcaagtcataatgtgatggaatatacgaatcgttacaacatgataaataattgaagtttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
  |   |  |||          |||   || |     |  ||||      |   | |    |   |  |        | |     |||| ||  | ||||| || |  ||   ||| || ||||| |||||||||||||| ||||| |||||||| |||||||| || |  |||||  | |||||||||||||||||    
tgacagactgttagggataacacaacctatgacaatttataataactacgtttgtcctttcttccatgttcacagcatctttaataata-tacctctgcagATATGGTGTTTCTGGTTTCCCTACATTGAAGTTCTTCCCTAAGGGAAACAAAGCCGGTGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAG

upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G008647_T02 (Zea mays), 3'ss of exon 4
------tattcatagttgtcttccttt--caagtcataatgtgatggaatatacgaatcgttacaacatgataaataattgaagtttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
       ||   || |  | | ||| |  ||| | |||||       | |||     || || |  |    |  | |    |  |||  |   |  |||  | ||||| || |  ||   | | || ||||| |||||||||||||| ||||| |||||||| |||||||| || |  |||||  | |||||||||||||||||    
caaaagcatctttaataatatacctatgacaatttataata------actatgtttgtcctttcttccatgttcacagc--atctttaataataatatacctctgcagATATGGTGTTTCTAGTTTCCCTACATTGAAGTTCTTCCCTAAGGGAAACAAAGCCGGTGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAG

upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G110742_T02 (Zea mays), 3'ss of exon 7
tattcatagttgtcttcctttcaagtcataatgtgatggaatatacgaatcgttacaacatgataaataattgaagtttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
                                           || | ||  || ||   | | ||       |  |||  |   |  |||  | ||||| || |  ||   ||| || ||||| |||||||||||||| ||||| |||||||| |||||||| || |  |||||  | |||||||||||||||||    
------------------------------------------gtatgcattcttccatgttcacaac------atctttaataataatatacctctgcagATATGGTGTTTCTGGTTTCCCTACATTGAAGTTCTTCCCTAAGGGAAACAAAGCCGGTGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAG

upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G404011_T01 (Zea mays), 3'ss of exon 5
--------------------------------------------------------------------------------------------tattcatagttgtcttcctttcaagtcataatgtgatggaatatacgaatcgttacaacatgataaataattgaag----tttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
                                                                                            | |    |      |||||    | ||| |    || |  ||   |   |||||  |     ||  ||  |   |     |||  |   |  |||  | ||||| || |  ||   ||| || ||||| |||||||||||||| ||||| |||||||  |||||||| || |  |||||  | |||||||||||||||||    
gtatgcattctgacttgtctatttcagtggttgttatgcacattagctttcagcctttagtttaacaccattggattttcttatatggcgattgtgatgaaaaaatttcctcaggaatcaca----gaagtgattctctcgtcgtttgacagatatggatgttcacaacatctttaataataatatacctctgcagATATGGTGTTTCTGGTTTCCCTACATTGAAGTTCTTCCCTAAGGGAAACAAAGTCGGTGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAG

upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G170845_T01 (Zea mays), 3'ss of exon 3
--------------------------------------------------------------------------------------------tattcatagttgtcttcctttcaagtcataatgtgatggaatatacgaatcgttacaacatgataaataattgaag----tttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
                                                                                            | |    |      |||||    | ||| |    || |  ||   |   |||||  |     ||  ||  |   ||    |||  |   |  |||  | ||||| || |  ||   ||| || ||||| ||||||||||  || ||||| |||||||| |||||||| || |  |||||  | |||||||||||||||||    
gtatgcattctgacttgtctatttcagtggttgttatgcacattagctttcagcctttagtttaacaccactggattttcttatattacgattgtgatgaaaaaatttcctcatgaatcaca----gaagtgattctctcgtcgtttgacagatatggatgttcacagcatctttaataataatatacctctgcagATATGGTGTTTCTGGTTTCCCTACATTGAAGTTCTATCCTAAGGGAAACAAAGCCGGTGAAGATTATGATGGTGGCCGGGACTTGGATGACTTTGTCAAG

upper sequence: GLYMA10G01820.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G47470.3 (Arabidopsis thaliana), 3'ss of exon 7
tattcatagttgtcttcctttcaagtcataatgtgatggaatatacgaatcgttacaacatgataaataattgaagtttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
     |   | | |   | ||  | | |||  |   |      |   | || ||      | |||||      |  |       | ||   | ||| ||| || |  ||||||||||| || || ||||| ||||||||||||| ||||||||||||| | || || |  ||||| || || || |||||||||||    
---gtaagttggacaggcattttattaataccgattttactgtttaaagtcatttatgtttcataaaaccaaaacataaagacaagtaccttatattcagATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAAGGACAACAAAGCTGGTCACGATTATGACGGTGGCAGGGATTTAGATGACTTTGTAAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317314|gb|FK010545.1|FK010545
EST:     GGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|207826896|gb|GD797445.1|GD797445
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGTAGTTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAAC
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTG-AGT-GGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAAC
EST: gi|193622826|gb|FK571096.1|FK571096
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTT
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTT
EST: gi|193544830|gb|FK502147.1|FK502147
EST:     CTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: CTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|193542813|gb|FK504134.1|FK504134
EST:     CTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: CTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|193581994|gb|FK536905.1|FK536905
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|193465486|gb|FK432447.1|FK432447
EST:     TAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: TAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|193383736|gb|FK345975.1|FK345975
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|193404855|gb|FK373338.1|FK373338
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|193397053|gb|FK362009.1|FK362009
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|21993939|gb|BQ785467.1|BQ785467
EST:     GGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|207839904|gb|GD810097.1|GD810097
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGTAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|22540736|gb|BU090579.1|BU090579
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCATAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|208102970|gb|GD901408.1|GD901408
EST:     ATAAATAGTAGGGATCGTGGCTAGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACA
genomic: ATAAATA-TAGGGATC-TGGCT-GAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACA
EST: gi|57574002|gb|CX546977.1|CX546977
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|151396040|gb|EV265917.1|EV265917
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|208117268|gb|GD918182.1|GD918182
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|9440203|gb|BE440712.1|BE440712
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|151397387|gb|EV267260.1|EV267260
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCC
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCC
EST: gi|6746823|gb|AW317279.1|AW317279
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
EST: gi|151406560|gb|EV276375.1|EV276375
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTC
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTC
EST: gi|193577177|gb|FK535700.1|FK535700
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTATGATGTGAGTGGATTTCCTACCTTGAAG
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAG
EST: gi|298193172|gb|HO033606.1|HO033606
EST:     GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA                         GTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA
genomic: GTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAAgtgagtttta ... atttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaatcgttacaacatgataaataattgaagtttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT
                 ataaataattgaagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattcatagttgtcttcctttcaagtcataatgtgatggaatatacgaatcgttacaacatgataaataattgaagtttgctggaataatatttatgcagGTACGACGTGAGTGGATTTCCTACCTTGAAGTTCTTCCCAAAGGGCAACAAAGCTGGTGAAGACTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - cctttca
- - - - - - - - - - - - - - - - gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgga