Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTGATGGTATCCTATTACAGTGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAGTGTGATCCGAAAACCAAAAGAGTAACACATCTgtgagttttgttgtagatcataagacatttcttgtctagcacctactataagacagttttctagagatgaaagtgtttgattgactgatgtagtttgtca...
Basic information
species | Glycine max |
transcript | GLYMA09G34940.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G34940.3 (Glycine max), 5'ss of exon 3
lower sequence: AT2G35620.2 (Arabidopsis thaliana), 5'ss of exon 3
GTTCTGATGGTATCCTATTACAGTGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAGTGTGATCCGAAAACCAAAAGAGTAACACATCTgtgagttttgttgtagatcataagacatttcttgtctagcacctactataagaca-gttttctagagatgaaagtgtttgattgactgatgtagtttgtca
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CTTCTGATGGTGTTATTGGTCTGTGGAGACCAGAGGATCCTGATCCATGTAACTGGAAAGGAGTGACCTGTGATGCAAAAACAAAAAGAGTTATAGCCTTgtaagtttaaaatttctttagtttaaattctttttttttcttc-agtatgtggtgcatcttttgtcggttcctgaagtttcttgtgtgcag----------
upper sequence: GLYMA09G34940.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 3
GTTCTGATGGTATCCTATTACAGTGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAGTGTGATCCGAAAACCAAAAGAGTAACACATCTgtgagttttgttgtagatcataagacatttcttgtctagcacctactataagacagttttctagagatgaaagtgtttgattgactgatgtagtttgtca-
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GTTCAGATGGCGTCCTTCGTCAATGGAGACCAGAGGATCCTGACCCATGTGGTTGGAAAGGAGTGACATGTGATTTAGAAACCAAGAGAGTAATATACTTgtgagttttttaagcaacctcaagatttgttttggaatgcttgtggcaggagcctagtaattccttactttcataattgcttctattgt-tagcctatggtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193513264|gb|FK470028.1|FK470028EST: AAATGGAAAGGAGTGAAGTGTGATCCGAAAACCAAAAGAGTAACACATCT GAGTCTATCTCACCACAAGTTAAGTGGGTCTATATCACCTGACCTTGGGAA
genomic: AAATGGAAAGGAGTGAAGTGTGATCCGAAAACCAAAAGAGTAACACATCTgtgagttttg ... gatgttgtagGAGTCTATCTCACCACAAGTTAAGTGGGTCTATATCACCTGACCTTGGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTGATGGTATCCTATTACAGTGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAGTGTGATCCGAAAACCAAAAGAGTAACACATCTgtgagttttgttgtagatcataagacatttcttgtctagcacctactataagacagttttctagagatgaaagtgtttgattgactgatgtagtttgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG