Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagaagatgtgttttccttttgaaatttacatcttcagtgtatcgtatctttgcttaaatcaatttggggggataatgatgtttgtgatgcattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAGCTGCAAAAGGGCTTGCCTACTTGCACCATGATTGTTCCCCCAGGATCAT

Basic information

species Glycine max
transcript GLYMA09G34940.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34940.2 (Glycine max), 3'ss of exon 11
lower sequence: AT2G35620.1 (Arabidopsis thaliana), 3'ss of exon 11
cagaagatgtgttttccttttgaaatttacatcttcagtgtatcgtatctttgcttaaatcaatttggggggataatgatgtttgtgatgcattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAGCTGCAAAAGGGCTTGCCTACTTGCACCATGATTGTTCCCCCAGGATCAT
       |      ||   || | ||||||   ||   | || || |   ||   | | || |||         | |||  ||| |||     ||   ||| ||||  || || || || |||||||||||  | ||||| || || ||||| ||||||||| | || |||||||| ||||||||||| || ||||| ||
------gtaaaccctcaacttcatatttacgggtttcct-taacggagaatta--tgattctatta--------agtgaaatttttgaa----tgtgtagAGAGAGGCGAGCAGCTGGATTGGGATTCGCGAGTTAATATCATAATAGGAGCGGCAAAAGGGTTGGCATACTTGCATCATGATTGTTCTCCTAGGATTAT

upper sequence: GLYMA09G34940.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv02s0087g00170.t01 (Vitis vinifera), 3'ss of exon 11
cagaagatgtgttttccttttgaaatttacatcttcagt--gtatcgtatctttgcttaaatc--aatttggggggataatgatg-tttgtgatgcattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAGCTGCAAAAGGGCTTGCCTACTTGCACCATGATTGTTCCCCCAGGATCAT
       |   |||    |||   | | || |  ||  |  || |  | | || |  || |||  |  ||    | ||||| |||  || | |||  |   ||||| ||| | || ||||||||||||||| | ||||||||||| |||||||||||||||||||| || |||||| |||| ||||||||||||||  |||| ||
-----tttccctttataattttggaatgacgtaatctataagttttttgttttagaatagatcctatattctttgtataataatgacttcttatgtgtgacacagAGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAGCTGCAAAAGGACTAGCCTACCTGCATCATGATTGTTCCCCTCGGATTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193721537|gb|FK658693.1|FK658693
EST:     GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATG                         AAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
genomic: GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccc ... cattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
EST: gi|192308735|gb|FG999774.1|FG999774
EST:     GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATG                         AAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
genomic: GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccc ... cattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
EST: gi|19935268|gb|BQ080298.1|BQ080298
EST:     GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATG                         AAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG
genomic: GTTAATATATGATTACCTACCAGGTGGTAGTCTTGACGAAGCACTTCATGgtaagatccc ... cattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttgcttaaatcaatttggggggataatgatgtttgtgatgcattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAGCTGCAAAAGGGCTTGCCTACTTGCACCATGATTGTTCCCCCAGGATCAT
         ttaaatcaattt  TA-rich tract