Sequence
atgc intronic sequence ATGC exonic sequenceTGGGCTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAGgtaactgcaacagtacccaaaatacttcctcttatctgaacatgactactttatatatttttactctaagctgaaacgtagcaatgtctaccttctgcat...
Basic information
species | Glycine max |
transcript | GLYMA09G29070.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g42520.2 (Oryza sativa), 5'ss of exon 9
TGGGCTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAGgtaactgcaacagtacccaaaatacttcctcttatctgaacatgactactttatatatttttactctaagctgaaacgtagcaatgtctaccttctgcat-----
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TGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgta-cggagacaatgtgttgtagaagcaaac--atcctaataaaactgaattctat--tttcagttaaaaatattaaattaagaagctgaacttcatcatatgta
upper sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G149272_T02 (Zea mays), 5'ss of exon 9
TGGGCTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAGgtaactgcaacagtacccaaaatacttcctcttatctgaacatgactactttatatatttttactc--taagctgaaacgtagcaatgtctaccttctgcat-
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TGCATTTCTTCTATCCGGAAGAACACTGAAGGGATCTATGTTTGGAGGATGGAAACCTAAATCTGATCTACCTTCATTGGTGGATAAATATGCAGCAAAGgtatttatgattcttttgcagaaacaaatgtttga--aaacaaaataagatta-acattattaattgttgaagtgtataaatggattgattgccttctcccac
upper sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G24760.3 (Arabidopsis thaliana), 5'ss of exon 9
TGGGCTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAGgtaactgca---acag-tacccaaaatacttcctcttatctgaacatgactactttatatatttttactctaagctgaaacgtagcaatgtctaccttctgcat
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CGGACTTTTCCTTTCTGGGAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCTAAATCTGATCTTCCTTCACTCATTGACAAGTACATGAACAAGgtatacacgtgtgcagctacattaagcaaaagcactt-cttgtcgatgaatagtttgtttaagttttcactcttccgtggcgcag-------------------
upper sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 9
TGGGCTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAGgtaactgcaacagtacccaaaatacttcctctta-tctgaacatgactactttatatatttttactctaagctgaaacgtagcaatgtctaccttctgcat
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TGGATTATTTCTTTCTGGAAGAACGTTGAGAGGATCTTTATTTGGAGGATGGAGACCTAAATCTGATCTTCATTCATTAGTAGACATGTATATGAGGAAGgtaagaaccacaattaatcttacagtggatttcagcctgaattttctcactttatttgtttttataccatgtcttgacttctgcctctcaaagcttcact-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51343194|gb|CO983927.1|CO983927EST: GGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAG GAAATCCAGATTG
genomic: GGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAGgtaactgcaa ... taatatgcagGAAATCCAGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGCTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCTTCATTAGTAGAGAAGTATCTCAACAAGgtaactgcaacagtacccaaaatacttcctcttatctgaacatgactactttatatatttttactctaagctgaaacgtagcaatgtctaccttctgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc